SMTL ID : 4le7.1 (1 other biounit)

The Crystal Structure of Pyocin L1 at 2.09 Angstroms

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

monomer

Ligands

28 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: K.122, N.123, T.245, T.246 Ligands: EDO.3, CL.29 Ligand excluded by PLIP EDO.2: 8 residues within 4Å: Chain A: A.2, S.4, A.6, Q.9, L.243, D.244, T.245, T.246 Ligand excluded by PLIP EDO.3: 6 residues within 4Å: Chain A: E.89, Y.91, N.123, I.125, P.247 Ligands: EDO.1 Ligand excluded by PLIP EDO.4: 5 residues within 4Å: Chain A: P.20, N.21, D.96, Q.239 Ligands: EDO.5 Ligand excluded by PLIP EDO.5: 7 residues within 4Å: Chain A: P.20, Q.95, D.96, G.238, Q.239, S.250 Ligands: EDO.4 Ligand excluded by PLIP EDO.6: 4 residues within 4Å: Chain A: K.124, E.137, Y.138, I.139 Ligand excluded by PLIP EDO.7: 3 residues within 4Å: Chain A: Q.9, K.122 Ligands: CL.29 Ligand excluded by PLIP EDO.8: 2 residues within 4Å: Chain A: R.8, D.88 Ligand excluded by PLIP EDO.9: 1 residues within 4Å: Chain A: K.231 Ligand excluded by PLIP EDO.10: 2 residues within 4Å: Chain A: G.200, P.232 Ligand excluded by PLIP EDO.11: 3 residues within 4Å: Chain A: T.48, P.49 Ligands: EDO.17 Ligand excluded by PLIP EDO.12: 5 residues within 4Å: Chain A: K.108, W.109, T.195, H.196, T.197 Ligand excluded by PLIP EDO.13: 3 residues within 4Å: Chain A: A.107, G.110, I.112 Ligand excluded by PLIP EDO.14: 4 residues within 4Å: Chain A: L.36, G.98, L.224, K.225 Ligand excluded by PLIP EDO.15: 2 residues within 4Å: Chain A: K.67, G.69 Ligand excluded by PLIP EDO.16: 5 residues within 4Å: Chain A: V.10, K.55, V.57, E.59, Y.65 Ligand excluded by PLIP EDO.17: 7 residues within 4Å: Chain A: T.47, T.48, V.50, A.72, W.73 Ligands: EDO.11, EDO.18 Ligand excluded by PLIP EDO.18: 4 residues within 4Å: Chain A: V.50, N.66, A.72 Ligands: EDO.17 Ligand excluded by PLIP EDO.19: 3 residues within 4Å: Chain A: V.71, A.72, S.74 Ligand excluded by PLIP EDO.20: 5 residues within 4Å: Chain A: Y.143, I.164, T.210, G.211, K.212 Ligand excluded by PLIP EDO.21: 4 residues within 4Å: Chain A: V.50, N.66, K.67, A.68 Ligand excluded by PLIP EDO.22: 3 residues within 4Å: Chain A: K.25, Y.37, G.40 Ligand excluded by PLIP EDO.23: 3 residues within 4Å: Chain A: Q.15, F.16 Ligands: EDO.24 Ligand excluded by PLIP EDO.24: 1 residues within 4Å: Ligands: EDO.23 Ligand excluded by PLIP EDO.25: 3 residues within 4Å: Chain A: R.12, D.13, Q.15 Ligand excluded by PLIP EDO.26: 2 residues within 4Å: Chain A: D.13, A.30 Ligand excluded by PLIP EDO.27: 2 residues within 4Å: Chain A: V.113, S.115 Ligand excluded by PLIP EDO.28: 4 residues within 4Å: Chain A: Q.148, D.150, N.152, Y.156 Ligand excluded by PLIP

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.29: 4 residues within 4Å: Chain A: K.122, T.245 Ligands: EDO.1, EDO.7 Ligand excluded by PLIP CL.30: 2 residues within 4Å: Chain A: W.45, N.46 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McCaughey, L.C. et al., Lectin-Like Bacteriocins from Pseudomonas spp. Utilise D-Rhamnose Containing Lipopolysaccharide as a Cellular Receptor. Plos Pathog. (2014)

Release Date

2014-02-19

Peptides

Pyocin L1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Pyocin L1

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