- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.52 Å
- Oligo State
- homo-dimer
- Ligands
- 14 x SO4: SULFATE ION(Non-functional Binders)
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.8: 3 residues within 4Å:- Chain A: R.268, P.270, F.273
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.268
- Water bridges: A:P.270
GOL.9: 5 residues within 4Å:- Chain A: F.2, L.3, A.4, Q.5, Q.38
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:A.4, A:Q.5, A:Q.38
GOL.18: 3 residues within 4Å:- Chain B: R.268, P.270, F.273
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.268
- Water bridges: B:P.270
GOL.19: 5 residues within 4Å:- Chain B: F.2, L.3, A.4, Q.5, Q.38
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:A.4, B:Q.5, B:Q.38
- 2 x AZZ: 3'-azido-3'-deoxythymidine(Non-covalent)
AZZ.10: 11 residues within 4Å:- Chain A: T.87, L.117, Y.168, R.171, V.177, I.183, S.186, K.190, F.210, M.211, L.220
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:Y.168
- Hydrogen bonds: A:Y.168, A:R.171, A:R.171, A:S.186, A:S.186, A:K.190
- Water bridges: A:F.210
- pi-Stacking: A:Y.168
AZZ.20: 11 residues within 4Å:- Chain B: T.87, L.117, Y.168, R.171, V.177, I.183, S.186, K.190, F.210, M.211, L.220
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:Y.168
- Hydrogen bonds: B:R.171, B:R.171, B:S.186, B:S.186, B:K.190
- Water bridges: B:T.87, B:F.210
- pi-Stacking: B:Y.168
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Timofeev, V. et al., 3'-Azidothymidine in the active site of Escherichia coli thymidine phosphorylase: the peculiarity of the binding on the basis of X-ray study. Acta Crystallogr.,Sect.D (2014)
- Release Date
- 2014-04-09
- Peptides
- Thymidine phosphorylase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.52 Å
- Oligo State
- homo-dimer
- Ligands
- 14 x SO4: SULFATE ION(Non-functional Binders)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 2 x AZZ: 3'-azido-3'-deoxythymidine(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Timofeev, V. et al., 3'-Azidothymidine in the active site of Escherichia coli thymidine phosphorylase: the peculiarity of the binding on the basis of X-ray study. Acta Crystallogr.,Sect.D (2014)
- Release Date
- 2014-04-09
- Peptides
- Thymidine phosphorylase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A