SMTL ID : 4lix.1

Crystal structure of ent-copalyl diphosphate synthase from Arabidopsis thaliana in complex with (S)-15-aza-14,15-dihydrogeranylgeranyl thiolodiphosphate at 1.55 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x AG8: S-[(2E,6E,10E)-14-(dimethylamino)-3,7,11-trimethyltetradeca-2,6,10-trien-1-yl] trihydrogen thiodiphosphate(Non-covalent)

AG8.1: 18 residues within 4Å: Chain A: I.125, G.126, K.162, T.177, H.180, V.240, F.246, W.250, W.286, D.296, D.297, F.329, Q.332, N.334, K.380, W.381, W.422, Y.428 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:I.125, A:H.180, A:V.240, A:W.286, A:F.329, A:W.381 Hydrogen bonds: A:G.126, A:K.162, A:N.334, A:K.380 Water bridges: A:E.128, A:E.128 Salt bridges: A:K.162, A:D.294, A:D.296, A:D.297, A:K.380 pi-Cation interactions: A:F.246

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 4 residues within 4Å: Chain A: S.496, H.497, S.580, H.581 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.496, A:S.580, A:S.580 Water bridges: A:S.496, A:H.497 Salt bridges: A:H.497, A:H.581

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 2 residues within 4Å: Chain A: R.109, P.146 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koksal, M. et al., 1.55 angstrom -resolution structure of ent-copalyl diphosphate synthase and exploration of general acid function by site-directed mutagenesis. Biochim.Biophys.Acta (2013)

Release Date

2013-10-02

Peptides

Ent-copalyl diphosphate synthase, chloroplastic: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ent-copalyl diphosphate synthase, chloroplastic

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