SMTL ID : 4ll3.1

Structure of wild-type HIV protease in complex with darunavir

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

2 x 017: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE(Non-covalent)

017.1: 21 residues within 4Å: Chain A: D.25, G.27, A.28, D.30, V.32, G.48, G.49, P.81, V.82, I.84 Chain B: L.23, D.25, G.27, A.28, D.29, D.30, V.32, G.48, G.49, I.50 Ligands: 017.2 19 PLIP interactions: 9 interactions with chain A, 10 interactions with chain B Hydrophobic interactions: A:A.28, A:V.32, A:P.81, A:V.82, A:I.84, B:L.23, B:I.50 Hydrogen bonds: A:D.30, A:D.30, A:I.50, B:G.27, B:G.27, B:D.29, B:D.30 Salt bridges: A:D.25, B:D.25 Water bridges: B:D.29, B:I.50, B:I.50 017.2: 22 residues within 4Å: Chain A: L.23, D.25, G.27, A.28, D.29, D.30, V.32, G.48, G.49, I.50 Chain B: R.8, D.25, G.27, A.28, D.30, V.32, G.48, G.49, P.81, V.82, I.84 Ligands: 017.1 19 PLIP interactions: 9 interactions with chain A, 10 interactions with chain B Hydrophobic interactions: A:L.23, A:I.50, B:A.28, B:V.32, B:P.81, B:V.82, B:I.84 Hydrogen bonds: A:G.27, A:G.27, A:D.29, A:D.30, B:D.30, B:D.30, B:I.50 Water bridges: A:I.50, A:I.50, B:R.8 Salt bridges: A:D.25, B:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kozisek, M. et al., Thermodynamic and structural analysis of HIV protease resistance to darunavir - analysis of heavily mutated patient-derived HIV-1 proteases. Febs J. (2014)

Release Date

2014-04-16

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protease

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