SMTL ID : 4lm9.1

Crystal structure of HCoV-OC43 N-NTD complexed with GMP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x 5GP: GUANOSINE-5'-MONOPHOSPHATE(Non-covalent)

5GP.1: 16 residues within 4Å: Chain A: E.1, F.2, P.6, Y.7, Y.8, S.9, W.10, F.11, S.12, G.13, R.67, Y.69, Y.71, R.109, A.116, E.134 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:S.9, A:F.11, A:F.11, A:G.13, A:Y.69, A:Y.71, A:R.109, A:R.109, A:E.134, A:E.134 Water bridges: A:A.116 Salt bridges: A:R.67 pi-Stacking: A:Y.8, A:Y.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, S.Y. et al., Structural basis for the identification of the N-terminal domain of coronavirus nucleocapsid protein as an antiviral target. J.Med.Chem. (2014)

Release Date

2014-05-28

Peptides

Nucleoprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nucleoprotein

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