SMTL ID : 4lpb.1

Crystal structure of a topoisomerase ATPase inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x 1YP: 1-ethyl-3-{5'-(5-oxo-4,5-dihydro-1,3,4-oxadiazol-2-yl)-4-[4-(trifluoromethyl)-1,3-thiazol-2-yl]-3,3'-bipyridin-6-yl}urea(Non-covalent)

1YP.1: 15 residues within 4Å: Chain A: I.48, N.51, A.52, E.55, V.76, D.78, R.81, G.82, M.83, P.84, T.94, I.98, R.140, T.172, V.174 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.48, A:V.76, A:V.174 Hydrogen bonds: A:D.78, A:D.78, A:R.140, A:R.140 Water bridges: A:N.51, A:G.82, A:T.172 pi-Cation interactions: A:R.81

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Basarab, G.S. et al., Fragment-to-Hit-to-Lead Discovery of a Novel Pyridylurea Scaffold of ATP Competitive Dual Targeting Type II Topoisomerase Inhibiting Antibacterial Agents. J.Med.Chem. (2013)

Release Date

2013-10-30

Peptides

Topoisomerase IV subunit B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Topoisomerase IV subunit B

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