SMTL ID : 4lq4.1

crystal structure of mutant ribosomal protein L1 from Methanococcus jannaschii with deletion of 8 residues from C-terminus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.1: 6 residues within 4Å: Chain A: I.35, K.39, E.41, N.42, Y.189, E.190 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.41, A:N.42, A:E.190 Water bridges: A:K.191 Salt bridges: A:K.39, A:H.195

1 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.2: 2 residues within 4Å: Chain A: P.141, R.145 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:P.141, A:P.141 Hydrogen bonds: A:R.145, A:R.145 Water bridges: A:L.142

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: V.48, V.49 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: A.99, K.100, R.126, K.128 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: T.170, D.171, E.172 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sarskikh, A.V. et al., Crystal structure of a mutant of archaeal ribosomal protein L1 from Methanococcus jannaschii. Crystallography Reports (2014)

Release Date

2014-07-02

Peptides

50S ribosomal protein L1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

50S ribosomal protein L1