SMTL ID : 4lr4.3 (3 other biounits)

Crystal structure of a putative secreted protein (EUBREC_3654) from Eubacterium rectale at 2.43 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.43 Å

Oligo State

monomer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: T.170, F.173, D.174, R.175 7 PLIP interactions: 7 interactions with chain A Water bridges: A:Q.25, A:F.173, A:D.174, A:Y.176, A:Y.176, A:Y.176, A:Y.176 GOL.2: 8 residues within 4Å: Chain A: M.65, E.66, Y.67, N.68, Q.72, Q.103, Y.106, Y.220 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:E.66, A:N.68, A:Q.72, A:Q.103 Water bridges: A:E.66, A:N.68, A:Q.72, A:Y.220 GOL.3: 5 residues within 4Å: Chain A: S.292, I.293, Q.310, W.314 Ligands: CL.12 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.293, A:Q.310 Water bridges: A:D.279, A:Y.295 GOL.4: 4 residues within 4Å: Chain A: E.89, G.90, F.91, N.123 No protein-ligand interaction detected (PLIP) GOL.5: 5 residues within 4Å: Chain A: S.61, S.63, K.101, N.322 Ligands: GOL.6 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.61, A:K.101, A:K.101, A:N.322, A:N.322 GOL.6: 4 residues within 4Å: Chain A: M.59, S.61, S.325 Ligands: GOL.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.61, A:S.61 Water bridges: A:N.99, A:N.99

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.7: 6 residues within 4Å: Chain A: Y.114, E.145, T.213, G.214, Y.215, H.216 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.145, A:G.214, A:Y.215, A:H.216 Water bridges: A:N.116, A:N.116, A:T.213 PO4.8: 4 residues within 4Å: Chain A: D.154, D.156, N.158, Y.172 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.154, A:D.154, A:D.156, A:N.158 Water bridges: A:Y.172 PO4.9: 3 residues within 4Å: Chain A: N.68, F.69, S.70 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.70, A:S.70, A:S.70 Water bridges: A:F.69, A:F.69

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.10: 1 residues within 4Å: Chain A: S.88 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain A: Y.84, A.85 Ligand excluded by PLIP CL.12: 4 residues within 4Å: Chain A: D.294, K.307, Q.310 Ligands: GOL.3 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a hypothetical protein (EUBREC_3654) from Eubacterium rectale at 2.43 A resolution. To be published

Release Date

2013-09-18

Peptides

hypothetical protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

hypothetical protein

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