SMTL ID : 4lrc.1 (2 other biounits)

Phosphopentomutase V158L variant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

monomer

Ligands

3 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: D.35, T.107, D.349, H.350 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.35, A:D.35, A:D.349, A:D.349, A:H.350 MN.2: 5 residues within 4Å: Chain A: T.107, D.178, D.308, H.313, H.361 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:T.107, A:D.178, A:D.308, A:H.313, A:H.361 MN.3: 3 residues within 4Å: Chain A: G.49, D.50, H.356 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:G.49, A:D.50, A:H.356, H2O.4, H2O.7

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 2 residues within 4Å: Chain A: Y.118, Y.406 No protein-ligand interaction detected (PLIP) GOL.5: 4 residues within 4Å: Chain A: L.384, R.385, Q.386, D.390 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.385, A:R.385, A:Q.386, A:D.390, A:T.408 Water bridges: A:T.408

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.6: 3 residues within 4Å: Chain A: S.253, D.254, Y.255 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.254

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Birmingham, W.R. et al., Bioretrosynthetic construction of a didanosine biosynthetic pathway. Nat.Chem.Biol. (2014)

Release Date

2013-07-31

Peptides

Phosphopentomutase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphopentomutase

Related Entries With Identical Sequence