SMTL ID : 4ly4.1

Crystal structure of peptidoglycan deacetylase (HP0310) with Zinc from Helicobacter pylori

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: D.45, D.47, H.119, H.123 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.47, A:D.47, A:H.119, A:H.123 ZN.2: 4 residues within 4Å: Chain B: D.45, D.47, H.119, H.123 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.47, B:D.47, B:H.119, B:H.123, H2O.3 ZN.3: 4 residues within 4Å: Chain C: D.45, D.47, H.119, H.123 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.47, C:D.47, C:H.119, C:H.123 ZN.4: 4 residues within 4Å: Chain D: D.45, D.47, H.119, H.123 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.47, D:D.47, D:H.119, D:H.123, H2O.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shaik, M.M. et al., Characterization of the divalent metal binding site of bacterial polysaccharide deacetylase using crystallography and quantum chemical calculations. Proteins (2014)

Release Date

2013-08-28

Peptides

peptidoglycan deacetylase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

peptidoglycan deacetylase

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