- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)
- 2 x 56D: (3R)-2-oxo-3-phenylbutanoic acid(Non-covalent)
56D.2: 13 residues within 4Å:- Chain A: W.119, R.147, C.156, M.260, H.263, D.292, A.293, F.307, F.311, H.315, M.318
- Ligands: SAH.1, FE.3
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:M.260, A:A.293, A:F.307
- Salt bridges: A:R.147, A:H.315
56D.8: 11 residues within 4Å:- Chain B: W.119, R.147, C.156, M.260, H.263, D.292, A.293, F.307, F.311, H.315
- Ligands: FE.9
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:M.260, B:A.293, B:F.307, B:F.311
- Hydrogen bonds: B:W.119
- Salt bridges: B:R.147, B:H.315
- 2 x FE: FE (III) ION(Non-covalent)
FE.3: 3 residues within 4Å:- Chain A: H.263, H.315
- Ligands: 56D.2
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:H.263, A:H.315, H2O.1, H2O.1
FE.9: 3 residues within 4Å:- Chain B: H.263, H.315
- Ligands: 56D.8
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:H.263, B:H.315, H2O.8, H2O.17
- 2 x HF2: (2R)-2-hydroxy-3-phenylpropanoic acid(Covalent)
HF2.4: 6 residues within 4Å:- Chain A: D.329, F.332, C.339, V.340, K.341, K.342
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.329
- Salt bridges: A:K.342
HF2.10: 6 residues within 4Å:- Chain B: D.329, F.332, C.339, V.340, K.341, K.342
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.329
- Salt bridges: B:K.342
- 5 x CA: CALCIUM ION(Non-covalent)
CA.5: 2 residues within 4Å:- Chain A: D.326, D.329
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:D.326, A:D.329
CA.6: 4 residues within 4Å:- Chain A: S.19, H.20, M.21, S.22
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:S.19, A:H.20
CA.11: 3 residues within 4Å:- Chain B: A.246, G.248, F.250
No protein-ligand interaction detected (PLIP)CA.12: 4 residues within 4Å:- Chain B: G.104, P.105, F.107, D.108
No protein-ligand interaction detected (PLIP)CA.13: 2 residues within 4Å:- Chain B: Y.154, R.157
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zou, X.W. et al., Structure and mechanism of a nonhaem-iron SAM-dependent C-methyltransferase and its engineering to a hydratase and an O-methyltransferase. Acta Crystallogr.,Sect.D (2014)
- Release Date
- 2014-06-25
- Peptides
- Methyltransferase MppJ: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)
- 2 x 56D: (3R)-2-oxo-3-phenylbutanoic acid(Non-covalent)
- 2 x FE: FE (III) ION(Non-covalent)
- 2 x HF2: (2R)-2-hydroxy-3-phenylpropanoic acid(Covalent)
- 5 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zou, X.W. et al., Structure and mechanism of a nonhaem-iron SAM-dependent C-methyltransferase and its engineering to a hydratase and an O-methyltransferase. Acta Crystallogr.,Sect.D (2014)
- Release Date
- 2014-06-25
- Peptides
- Methyltransferase MppJ: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B