- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.42 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 24 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)
UNX.3: 4 residues within 4Å:- Chain A: G.79, K.83, Y.92, F.106
Ligand excluded by PLIPUNX.4: 3 residues within 4Å:- Chain A: L.89, A.90, N.219
Ligand excluded by PLIPUNX.5: 4 residues within 4Å:- Chain A: N.150, D.153, K.155, H.158
Ligand excluded by PLIPUNX.6: 3 residues within 4Å:- Chain A: D.239, V.242, L.243
Ligand excluded by PLIPUNX.7: 5 residues within 4Å:- Chain A: N.229, N.230, A.231, R.234
- Ligands: UNX.9
Ligand excluded by PLIPUNX.8: 2 residues within 4Å:- Chain A: R.22, F.24
Ligand excluded by PLIPUNX.9: 4 residues within 4Å:- Chain A: H.228, N.229, R.234
- Ligands: UNX.7
Ligand excluded by PLIPUNX.10: 2 residues within 4Å:- Chain A: R.112, R.113
Ligand excluded by PLIPUNX.11: 4 residues within 4Å:- Chain A: L.183, D.184, A.185, F.187
Ligand excluded by PLIPUNX.12: 6 residues within 4Å:- Chain A: R.113, V.114, G.115
- Chain B: R.213, R.244
- Ligands: UNX.13
Ligand excluded by PLIPUNX.13: 3 residues within 4Å:- Chain A: R.113
- Ligands: UNX.12, UNX.14
Ligand excluded by PLIPUNX.14: 2 residues within 4Å:- Chain A: R.113
- Ligands: UNX.13
Ligand excluded by PLIPUNX.18: 4 residues within 4Å:- Chain B: G.79, K.83, Y.92, F.106
Ligand excluded by PLIPUNX.19: 3 residues within 4Å:- Chain B: L.89, A.90, N.219
Ligand excluded by PLIPUNX.20: 4 residues within 4Å:- Chain B: N.150, D.153, K.155, H.158
Ligand excluded by PLIPUNX.21: 3 residues within 4Å:- Chain B: D.239, V.242, L.243
Ligand excluded by PLIPUNX.22: 5 residues within 4Å:- Chain B: N.229, N.230, A.231, R.234
- Ligands: UNX.24
Ligand excluded by PLIPUNX.23: 2 residues within 4Å:- Chain B: R.22, F.24
Ligand excluded by PLIPUNX.24: 4 residues within 4Å:- Chain B: H.228, N.229, R.234
- Ligands: UNX.22
Ligand excluded by PLIPUNX.25: 2 residues within 4Å:- Chain B: R.112, R.113
Ligand excluded by PLIPUNX.26: 4 residues within 4Å:- Chain B: L.183, D.184, A.185, F.187
Ligand excluded by PLIPUNX.27: 6 residues within 4Å:- Chain A: R.213, R.244
- Chain B: R.113, V.114, G.115
- Ligands: UNX.28
Ligand excluded by PLIPUNX.28: 3 residues within 4Å:- Chain B: R.113
- Ligands: UNX.27, UNX.29
Ligand excluded by PLIPUNX.29: 2 residues within 4Å:- Chain B: R.113
- Ligands: UNX.28
Ligand excluded by PLIP- 2 x 27Q: N-heptyl-N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alaninamide(Non-covalent)
27Q.15: 20 residues within 4Å:- Chain A: G.9, E.70, F.71, G.98, T.99, G.100, T.101, S.102, R.113, G.116, I.117
- Chain B: V.156, I.167, L.171, T.172, A.173, E.202, Y.240
- Ligands: ADP.1, MG.2
19 PLIP interactions:9 interactions with chain B, 10 interactions with chain A- Hydrophobic interactions: B:V.156, B:I.167, B:L.171, B:E.202, B:Y.240, B:Y.240, A:F.71
- Hydrogen bonds: B:T.172, B:A.173, A:G.9, A:T.99, A:G.100, A:T.101, A:R.113, A:R.113
- Water bridges: B:Y.240, A:K.13, A:N.96, A:G.98
27Q.30: 20 residues within 4Å:- Chain A: V.156, I.167, L.171, T.172, A.173, E.202, Y.240
- Chain B: G.9, E.70, F.71, G.98, T.99, G.100, T.101, S.102, R.113, G.116, I.117
- Ligands: ADP.16, MG.17
21 PLIP interactions:12 interactions with chain B, 9 interactions with chain A- Hydrophobic interactions: B:F.71, A:V.156, A:I.167, A:L.171, A:E.202, A:Y.240, A:Y.240
- Hydrogen bonds: B:G.9, B:T.99, B:G.100, B:T.101, B:R.113, B:R.113, A:T.172, A:A.173
- Water bridges: B:K.13, B:E.70, B:E.70, B:N.96, B:G.98, A:Y.240
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hughes, S.J. et al., Discovery of Potent Pantothenamide Inhibitors of Staphylococcus aureus Pantothenate Kinase through a Minimal SAR Study: Inhibition Is Due to Trapping of the Product. ACS Infect Dis (2016)
- Release Date
- 2014-09-03
- Peptides
- Type II pantothenate kinase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.42 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 24 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)
- 2 x 27Q: N-heptyl-N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alaninamide(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hughes, S.J. et al., Discovery of Potent Pantothenamide Inhibitors of Staphylococcus aureus Pantothenate Kinase through a Minimal SAR Study: Inhibition Is Due to Trapping of the Product. ACS Infect Dis (2016)
- Release Date
- 2014-09-03
- Peptides
- Type II pantothenate kinase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A