SMTL ID : 4mj8.1

Crystal structure of spermidine N-acetyltransferase from Vibrio cholerae in complex with polyamine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

homo-12-mer

Ligands

16 x SPM: SPERMINE(Non-covalent)

SPM.1: 12 residues within 4Å: Chain A: N.25, M.31, E.36, E.37, Y.39, E.40, E.44 Chain H: H.52, I.53, D.55, E.58, R.59 Ligand excluded by PLIP SPM.2: 11 residues within 4Å: Chain A: Y.33, W.34, F.35, E.36, I.77, E.78, E.87, F.88, Q.89, L.124, H.125 Ligand excluded by PLIP SPM.5: 12 residues within 4Å: Chain B: N.25, M.31, E.36, E.37, Y.39, E.40, E.44 Chain C: H.52, I.53, D.55, E.58, R.59 Ligand excluded by PLIP SPM.7: 12 residues within 4Å: Chain C: N.25, M.31, E.36, E.37, Y.39, E.40, E.44 Chain D: H.52, I.53, D.55, E.58, R.59 Ligand excluded by PLIP SPM.11: 12 residues within 4Å: Chain D: N.25, M.31, E.36, E.37, Y.39, E.40, E.44 Chain K: H.52, I.53, D.55, E.58, R.59 Ligand excluded by PLIP SPM.12: 11 residues within 4Å: Chain D: Y.33, W.34, F.35, E.36, I.77, E.78, E.87, F.88, Q.89, L.124, H.125 Ligand excluded by PLIP SPM.15: 12 residues within 4Å: Chain E: N.25, M.31, E.36, E.37, Y.39, E.40, E.44 Chain F: H.52, I.53, D.55, E.58, R.59 Ligand excluded by PLIP SPM.17: 12 residues within 4Å: Chain A: H.52, I.53, D.55, E.58, R.59 Chain F: N.25, M.31, E.36, E.37, Y.39, E.40, E.44 Ligand excluded by PLIP SPM.21: 12 residues within 4Å: Chain B: H.52, I.53, D.55, E.58, R.59 Chain G: N.25, M.31, E.36, E.37, Y.39, E.40, E.44 Ligand excluded by PLIP SPM.22: 11 residues within 4Å: Chain G: Y.33, W.34, F.35, E.36, I.77, E.78, E.87, F.88, Q.89, L.124, H.125 Ligand excluded by PLIP SPM.25: 12 residues within 4Å: Chain H: N.25, M.31, E.36, E.37, Y.39, E.40, E.44 Chain I: H.52, I.53, D.55, E.58, R.59 Ligand excluded by PLIP SPM.27: 12 residues within 4Å: Chain I: N.25, M.31, E.36, E.37, Y.39, E.40, E.44 Chain J: H.52, I.53, D.55, E.58, R.59 Ligand excluded by PLIP SPM.31: 12 residues within 4Å: Chain E: H.52, I.53, D.55, E.58, R.59 Chain J: N.25, M.31, E.36, E.37, Y.39, E.40, E.44 Ligand excluded by PLIP SPM.32: 11 residues within 4Å: Chain J: Y.33, W.34, F.35, E.36, I.77, E.78, E.87, F.88, Q.89, L.124, H.125 Ligand excluded by PLIP SPM.35: 12 residues within 4Å: Chain K: N.25, M.31, E.36, E.37, Y.39, E.40, E.44 Chain L: H.52, I.53, D.55, E.58, R.59 Ligand excluded by PLIP SPM.37: 12 residues within 4Å: Chain G: H.52, I.53, D.55, E.58, R.59 Chain L: N.25, M.31, E.36, E.37, Y.39, E.40, E.44 Ligand excluded by PLIP

24 x EOH: ETHANOL(Non-functional Binders)

EOH.3: 2 residues within 4Å: Chain A: L.136, Y.137 Ligand excluded by PLIP EOH.4: 2 residues within 4Å: Chain A: K.51 Chain H: H.54 Ligand excluded by PLIP EOH.6: 2 residues within 4Å: Chain B: K.51 Chain C: H.54 Ligand excluded by PLIP EOH.8: 3 residues within 4Å: Chain C: W.34, E.36, Q.89 Ligand excluded by PLIP EOH.9: 1 residues within 4Å: Chain D: H.54 Ligand excluded by PLIP EOH.10: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP EOH.13: 2 residues within 4Å: Chain D: L.136, Y.137 Ligand excluded by PLIP EOH.14: 2 residues within 4Å: Chain D: K.51 Chain K: H.54 Ligand excluded by PLIP EOH.16: 2 residues within 4Å: Chain E: K.51 Chain F: H.54 Ligand excluded by PLIP EOH.18: 3 residues within 4Å: Chain F: W.34, E.36, Q.89 Ligand excluded by PLIP EOH.19: 1 residues within 4Å: Chain A: H.54 Ligand excluded by PLIP EOH.20: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP EOH.23: 2 residues within 4Å: Chain G: L.136, Y.137 Ligand excluded by PLIP EOH.24: 2 residues within 4Å: Chain B: H.54 Chain G: K.51 Ligand excluded by PLIP EOH.26: 2 residues within 4Å: Chain H: K.51 Chain I: H.54 Ligand excluded by PLIP EOH.28: 3 residues within 4Å: Chain I: W.34, E.36, Q.89 Ligand excluded by PLIP EOH.29: 1 residues within 4Å: Chain J: H.54 Ligand excluded by PLIP EOH.30: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP EOH.33: 2 residues within 4Å: Chain J: L.136, Y.137 Ligand excluded by PLIP EOH.34: 2 residues within 4Å: Chain E: H.54 Chain J: K.51 Ligand excluded by PLIP EOH.36: 2 residues within 4Å: Chain K: K.51 Chain L: H.54 Ligand excluded by PLIP EOH.38: 3 residues within 4Å: Chain L: W.34, E.36, Q.89 Ligand excluded by PLIP EOH.39: 1 residues within 4Å: Chain G: H.54 Ligand excluded by PLIP EOH.40: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Filippova, E.V. et al., Crystal structure of spermidine N-acetyltransferase from Vibrio cholerae in complex with polyamine. To be Published

Release Date

2013-09-25

Peptides

Spermidine n1-acetyltransferase: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

G
A

H
B

I
C

J
A

K
B

L
C

Spermidine n1-acetyltransferase

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