- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.84 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
- 13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 3 residues within 4Å:- Chain A: N.99, V.100, G.102
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.99
EDO.4: 3 residues within 4Å:- Chain A: E.126, F.129, Y.159
No protein-ligand interaction detected (PLIP)EDO.5: 4 residues within 4Å:- Chain A: S.230, S.231, V.232, K.233
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:V.232, A:K.233
- Water bridges: A:K.233
EDO.6: 10 residues within 4Å:- Chain A: E.57, N.59, E.79, F.115, H.140, H.142, F.176, E.239
- Ligands: MG.1, GOL.7
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.79
EDO.8: 3 residues within 4Å:- Chain A: H.169, D.171, D.172
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.171, A:D.172
EDO.9: 5 residues within 4Å:- Chain A: L.21, K.233, V.234, P.235, N.256
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.256
- Water bridges: A:N.256, A:N.256
EDO.10: 5 residues within 4Å:- Chain A: L.65, M.75, T.262, D.265
- Chain B: R.43
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.262, A:D.265
EDO.13: 11 residues within 4Å:- Chain B: E.57, N.59, P.61, E.79, F.115, H.140, H.142, E.239
- Ligands: MG.11, GOL.14, GOL.18
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:E.79
EDO.15: 2 residues within 4Å:- Chain B: E.194, K.195
3 PLIP interactions:3 interactions with chain B- Water bridges: B:E.194, B:K.195, B:G.197
EDO.16: 3 residues within 4Å:- Chain B: E.126, F.129, Y.159
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:E.126
EDO.17: 2 residues within 4Å:- Chain B: V.100, G.102
No protein-ligand interaction detected (PLIP)EDO.19: 4 residues within 4Å:- Chain B: L.91, K.92, Q.95, S.134
1 PLIP interactions:1 interactions with chain B- Water bridges: B:Q.95
EDO.21: 3 residues within 4Å:- Chain B: P.170, D.171, D.172
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:D.172
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.3: 3 residues within 4Å:- Chain A: Q.95, N.99
- Chain B: K.70
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Water bridges: B:K.70
- Hydrogen bonds: A:Q.95
PEG.20: 2 residues within 4Å:- Chain A: K.70
- Chain B: N.99
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B- Water bridges: A:K.70, A:G.71, B:N.99, B:N.99
- 3 x GOL: GLYCEROL(Non-functional Binders)
GOL.7: 6 residues within 4Å:- Chain A: T.35, E.239, V.259, G.261, T.262
- Ligands: EDO.6
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:E.239, A:V.259, A:G.261, A:T.262, A:T.262, A:T.262
- Water bridges: A:G.36, A:G.240, A:G.241
GOL.14: 7 residues within 4Å:- Chain B: T.35, E.239, V.259, G.261, T.262
- Ligands: EDO.13, GOL.18
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:E.239, B:G.261, B:T.262
- Water bridges: B:T.35, B:G.36, B:G.240, B:G.241
GOL.18: 5 residues within 4Å:- Chain B: F.176, M.204, E.239
- Ligands: EDO.13, GOL.14
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:E.239
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kim, Y. et al., Crystal Structure of Uncharacterized TIM Barrel Protein with the Conserved Phosphate Binding Site fromSebaldella termitidis. To be Published
- Release Date
- 2013-09-18
- Peptides
- Uncharacterized protein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.84 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
- 13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 3 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kim, Y. et al., Crystal Structure of Uncharacterized TIM Barrel Protein with the Conserved Phosphate Binding Site fromSebaldella termitidis. To be Published
- Release Date
- 2013-09-18
- Peptides
- Uncharacterized protein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B