SMTL ID : 4mm1.1 (3 other biounits)

GGGPS from Methanothermobacter thermautotrophicus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-hexamer

Ligands

6 x 1GP: SN-GLYCEROL-1-PHOSPHATE(Non-covalent)

1GP.1: 16 residues within 4Å: Chain A: L.23, F.79, Y.130, Y.172, E.174, G.176, S.177, G.178, A.179, G.202, G.203, G.204, V.223, T.224, G.225, T.226 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:E.174, A:S.177, A:G.178, A:G.203, A:G.204, A:G.225, A:T.226 Water bridges: A:S.177 1GP.3: 15 residues within 4Å: Chain B: L.23, F.79, Y.130, Y.172, E.174, S.177, G.178, A.179, G.202, G.203, G.204, I.205, V.223, T.224, G.225 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Y.172, B:E.174, B:G.178, B:G.203, B:G.225 1GP.5: 17 residues within 4Å: Chain C: L.23, F.79, Y.130, Y.172, E.174, G.176, S.177, G.178, A.179, G.202, G.203, G.204, I.205, V.223, T.224, G.225, T.226 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:Y.172, C:E.174, C:E.174, C:S.177, C:S.177, C:G.178, C:G.203, C:G.204, C:I.205, C:G.225, C:T.226 1GP.7: 15 residues within 4Å: Chain D: L.23, F.79, Y.130, Y.172, E.174, G.176, S.177, G.178, G.202, G.203, G.204, I.205, V.223, T.224, G.225 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:Y.172, D:S.177, D:S.177, D:G.178, D:G.203, D:G.204, D:V.223, D:G.225 1GP.9: 15 residues within 4Å: Chain E: L.23, F.79, Y.130, Y.172, E.174, G.176, S.177, G.178, G.202, G.203, G.204, I.205, V.223, T.224, G.225 7 PLIP interactions: 7 interactions with chain E Hydrogen bonds: E:E.174, E:S.177, E:G.178, E:G.203, E:G.204, E:G.225, E:G.225 1GP.11: 14 residues within 4Å: Chain F: L.23, F.79, Y.130, Y.172, E.174, G.176, S.177, G.178, G.202, G.203, G.204, I.205, V.223, T.224 6 PLIP interactions: 6 interactions with chain F Hydrogen bonds: F:E.174, F:S.177, F:G.178, F:G.203, F:G.204, F:I.205

6 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.2: 16 residues within 4Å: Chain A: P.80, G.81, N.82, T.83, V.86, I.93, F.95, M.96, S.97, L.98, W.106, A.110, Q.111, G.114, V.118, Y.130 No protein-ligand interaction detected (PLIP) PGE.4: 17 residues within 4Å: Chain B: P.80, G.81, N.82, T.83, V.86, I.93, F.95, M.96, L.98, W.106, A.110, Q.111, G.114, A.115, V.118, Y.130, V.139 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.114 PGE.6: 15 residues within 4Å: Chain C: P.80, G.81, N.82, T.83, V.86, I.93, F.95, M.96, L.98, W.106, A.110, Q.111, G.114, Y.130, V.139 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Q.111 PGE.8: 17 residues within 4Å: Chain D: P.80, G.81, N.82, T.83, V.86, I.93, F.95, M.96, S.97, L.98, W.106, A.110, Q.111, G.114, V.118, Y.130, V.139 No protein-ligand interaction detected (PLIP) PGE.10: 15 residues within 4Å: Chain E: P.80, G.81, N.82, T.83, V.86, I.93, F.95, M.96, L.98, W.106, A.110, Q.111, G.114, V.118, Y.130 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:G.81 PGE.12: 15 residues within 4Å: Chain F: P.80, G.81, N.82, T.83, V.86, I.93, F.95, M.96, L.98, W.106, A.110, Q.111, G.114, Y.130, V.139 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Peterhoff, D. et al., A comprehensive analysis of the geranylgeranylglyceryl phosphate synthase enzyme family identifies novel members and reveals mechanisms of substrate specificity and quaternary structure organization. Mol.Microbiol. (2014)

Release Date

2014-06-25

Peptides

Geranylgeranylglyceryl phosphate synthase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Geranylgeranylglyceryl phosphate synthase

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