SMTL ID : 4mo5.1 (1 other biounit)

Crystal structure of AnmK bound to AMPPCP and anhMurNAc

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x AH0: 2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCT-3-YLOXY)-PROPIONIC ACID(Non-covalent)

AH0.1: 9 residues within 4Å: Chain A: H.94, T.97, H.100, R.129, A.140, P.141, L.142, V.143, E.326 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:T.97, A:H.100, A:V.143, A:E.326 Hydrogen bonds: A:R.129, A:L.142, A:V.143 Water bridges: A:T.97, A:T.97, A:H.100 Salt bridges: A:R.129 AH0.3: 10 residues within 4Å: Chain B: M.8, H.94, T.97, H.100, R.129, A.140, P.141, L.142, V.143, E.326 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:T.97, B:H.100, B:V.143 Hydrogen bonds: B:T.97, B:R.129, B:L.142, B:V.143 Water bridges: B:H.100 Salt bridges: B:R.129

2 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)

ACP.2: 13 residues within 4Å: Chain A: G.164, G.165, N.187, D.191, F.202, D.203, R.204, D.205, G.291, G.292, G.293, F.295, N.296 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.165, A:D.191, A:R.204, A:D.205, A:D.205, A:G.292 Water bridges: A:N.187, A:D.203, A:N.296 ACP.4: 14 residues within 4Å: Chain B: S.12, D.17, G.164, G.165, N.187, D.191, F.202, D.203, R.204, D.205, G.291, G.292, F.295, N.296 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:S.12, B:S.12, B:G.165, B:D.191, B:D.205, B:G.292 Water bridges: B:D.203, B:N.296, B:E.326 pi-Stacking: B:F.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bacik, J.P. et al., Conformational Itinerary of Pseudomonas aeruginosa 1,6-Anhydro-N-acetylmuramic Acid Kinase during Its Catalytic Cycle. J.Biol.Chem. (2014)

Release Date

2014-01-01

Peptides

Anhydro-N-acetylmuramic acid kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Anhydro-N-acetylmuramic acid kinase

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