SMTL ID : 4mss.2 (1 other biounit)

Crystal structure of Burkholderia cenocepacia family 3 glycoside hydrolase (NagZ) bound to (3S,4R,5R,6S)-3-acetamido-4,5,6-trihydroxyazepane

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x 2CZ: N-[(3S,4R,5R,6S)-4,5,6-trihydroxyazepan-3-yl]acetamide(Non-covalent)

2CZ.1: 20 residues within 4Å: Chain A: I.42, F.44, D.73, E.75, R.81, F.131, V.144, I.145, R.148, K.178, H.179, H.183, S.190, H.191, I.223, D.261, D.262, M.265, L.290, C.292 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:D.73, A:D.73, A:R.81, A:R.148, A:R.148, A:K.178, A:H.179, A:D.261, A:D.261 Water bridges: A:H.191, A:H.191

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: A.45, R.78, V.79, Q.80, R.81, R.83 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.80, A:Q.80, A:Q.80, A:R.83, A:R.83 Water bridges: A:A.45 GOL.3: 4 residues within 4Å: Chain A: R.31, E.299, V.300, N.303 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.299, A:N.303 Water bridges: A:E.299

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mondon, M. et al., Selective trihydroxyazepane NagZ inhibitors increase sensitivity of Pseudomonas aeruginosa to beta-lactams. Chem.Commun.(Camb.) (2013)

Release Date

2013-10-30

Peptides

Beta-hexosaminidase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Beta-hexosaminidase 1

Related Entries With Identical Sequence