SMTL ID : 4mu1.1

The structure of wt A. thaliana IGPD2 in complex with Mn2+, imidazole, and sulfate at 1.5 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-24-mer

Ligands

48 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: H.86 Chain W: H.59, H.181, E.185 Ligands: IMD.3 5 PLIP interactions: 3 interactions with chain W, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: W:H.59, W:H.181, W:E.185, A:H.86, H2O.1 MN.2: 5 residues within 4Å: Chain A: H.85, E.89, H.157 Chain W: H.182 Ligands: IMD.3 5 PLIP interactions: 3 interactions with chain A, 1 interactions with chain W, 1 Ligand-Water interactions Metal complexes: A:H.85, A:E.89, A:H.157, W:H.182, H2O.1 MN.9: 5 residues within 4Å: Chain B: H.86 Chain V: H.59, H.181, E.185 Ligands: IMD.11 5 PLIP interactions: 3 interactions with chain V, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: V:H.59, V:H.181, V:E.185, B:H.86, H2O.9 MN.10: 5 residues within 4Å: Chain B: H.85, E.89, H.157 Chain V: H.182 Ligands: IMD.11 5 PLIP interactions: 1 interactions with chain V, 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: V:H.182, B:H.85, B:E.89, B:H.157, H2O.9 MN.17: 5 residues within 4Å: Chain C: H.86 Chain U: H.59, H.181, E.185 Ligands: IMD.19 5 PLIP interactions: 1 interactions with chain C, 3 interactions with chain U, 1 Ligand-Water interactions Metal complexes: C:H.86, U:H.59, U:H.181, U:E.185, H2O.17 MN.18: 5 residues within 4Å: Chain C: H.85, E.89, H.157 Chain U: H.182 Ligands: IMD.19 5 PLIP interactions: 3 interactions with chain C, 1 interactions with chain U, 1 Ligand-Water interactions Metal complexes: C:H.85, C:E.89, C:H.157, U:H.182, H2O.17 MN.25: 5 residues within 4Å: Chain D: H.86 Chain X: H.59, H.181, E.185 Ligands: IMD.27 5 PLIP interactions: 3 interactions with chain X, 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: X:H.59, X:H.181, X:E.185, D:H.86, H2O.26 MN.26: 5 residues within 4Å: Chain D: H.85, E.89, H.157 Chain X: H.182 Ligands: IMD.27 5 PLIP interactions: 3 interactions with chain D, 1 interactions with chain X, 1 Ligand-Water interactions Metal complexes: D:H.85, D:E.89, D:H.157, X:H.182, H2O.25 MN.33: 5 residues within 4Å: Chain E: H.86 Chain T: H.59, H.181, E.185 Ligands: IMD.35 5 PLIP interactions: 1 interactions with chain E, 3 interactions with chain T, 1 Ligand-Water interactions Metal complexes: E:H.86, T:H.59, T:H.181, T:E.185, H2O.34 MN.34: 5 residues within 4Å: Chain E: H.85, E.89, H.157 Chain T: H.182 Ligands: IMD.35 5 PLIP interactions: 3 interactions with chain E, 1 interactions with chain T, 1 Ligand-Water interactions Metal complexes: E:H.85, E:E.89, E:H.157, T:H.182, H2O.34 MN.41: 5 residues within 4Å: Chain F: H.86 Chain Q: H.59, H.181, E.185 Ligands: IMD.43 5 PLIP interactions: 3 interactions with chain Q, 1 interactions with chain F, 1 Ligand-Water interactions Metal complexes: Q:H.59, Q:H.181, Q:E.185, F:H.86, H2O.42 MN.42: 5 residues within 4Å: Chain F: H.85, E.89, H.157 Chain Q: H.182 Ligands: IMD.43 5 PLIP interactions: 1 interactions with chain Q, 3 interactions with chain F, 1 Ligand-Water interactions Metal complexes: Q:H.182, F:H.85, F:E.89, F:H.157, H2O.42 MN.49: 5 residues within 4Å: Chain G: H.86 Chain R: H.59, H.181, E.185 Ligands: IMD.51 5 PLIP interactions: 3 interactions with chain R, 1 interactions with chain G, 1 Ligand-Water interactions Metal complexes: R:H.59, R:H.181, R:E.185, G:H.86, H2O.50 MN.50: 5 residues within 4Å: Chain G: H.85, E.89, H.157 Chain R: H.182 Ligands: IMD.51 5 PLIP interactions: 3 interactions with chain G, 1 interactions with chain R, 1 Ligand-Water interactions Metal complexes: G:H.85, G:E.89, G:H.157, R:H.182, H2O.50 MN.57: 5 residues within 4Å: Chain H: H.86 Chain S: H.59, H.181, E.185 Ligands: IMD.59 5 PLIP interactions: 3 interactions with chain S, 1 interactions with chain H, 1 Ligand-Water interactions Metal complexes: S:H.59, S:H.181, S:E.185, H:H.86, H2O.59 MN.58: 5 residues within 4Å: Chain H: H.85, E.89, H.157 Chain S: H.182 Ligands: IMD.59 5 PLIP interactions: 3 interactions with chain H, 1 interactions with chain S, 1 Ligand-Water interactions Metal complexes: H:H.85, H:E.89, H:H.157, S:H.182, H2O.59 MN.65: 5 residues within 4Å: Chain I: H.86 Chain M: H.59, H.181, E.185 Ligands: IMD.67 5 PLIP interactions: 3 interactions with chain M, 1 interactions with chain I, 1 Ligand-Water interactions Metal complexes: M:H.59, M:H.181, M:E.185, I:H.86, H2O.67 MN.66: 5 residues within 4Å: Chain I: H.85, E.89, H.157 Chain M: H.182 Ligands: IMD.67 5 PLIP interactions: 1 interactions with chain M, 3 interactions with chain I, 1 Ligand-Water interactions Metal complexes: M:H.182, I:H.85, I:E.89, I:H.157, H2O.67 MN.73: 5 residues within 4Å: Chain J: H.86 Chain P: H.59, H.181, E.185 Ligands: IMD.75 5 PLIP interactions: 3 interactions with chain P, 1 interactions with chain J, 1 Ligand-Water interactions Metal complexes: P:H.59, P:H.181, P:E.185, J:H.86, H2O.75 MN.74: 5 residues within 4Å: Chain J: H.85, E.89, H.157 Chain P: H.182 Ligands: IMD.75 5 PLIP interactions: 3 interactions with chain J, 1 interactions with chain P, 1 Ligand-Water interactions Metal complexes: J:H.85, J:E.89, J:H.157, P:H.182, H2O.75 MN.81: 5 residues within 4Å: Chain K: H.86 Chain O: H.59, H.181, E.185 Ligands: IMD.83 5 PLIP interactions: 3 interactions with chain O, 1 interactions with chain K, 1 Ligand-Water interactions Metal complexes: O:H.59, O:H.181, O:E.185, K:H.86, H2O.84 MN.82: 5 residues within 4Å: Chain K: H.85, E.89, H.157 Chain O: H.182 Ligands: IMD.83 5 PLIP interactions: 3 interactions with chain K, 1 interactions with chain O, 1 Ligand-Water interactions Metal complexes: K:H.85, K:E.89, K:H.157, O:H.182, H2O.84 MN.89: 5 residues within 4Å: Chain L: H.86 Chain N: H.59, H.181, E.185 Ligands: IMD.91 5 PLIP interactions: 1 interactions with chain L, 3 interactions with chain N, 1 Ligand-Water interactions Metal complexes: L:H.86, N:H.59, N:H.181, N:E.185, H2O.92 MN.90: 5 residues within 4Å: Chain L: H.85, E.89, H.157 Chain N: H.182 Ligands: IMD.91 5 PLIP interactions: 1 interactions with chain N, 3 interactions with chain L, 1 Ligand-Water interactions Metal complexes: N:H.182, L:H.85, L:E.89, L:H.157, H2O.92 MN.97: 5 residues within 4Å: Chain K: H.59, H.181, E.185 Chain M: H.86 Ligands: IMD.99 5 PLIP interactions: 3 interactions with chain K, 1 interactions with chain M, 1 Ligand-Water interactions Metal complexes: K:H.59, K:H.181, K:E.185, M:H.86, H2O.100 MN.98: 5 residues within 4Å: Chain K: H.182 Chain M: H.85, E.89, H.157 Ligands: IMD.99 5 PLIP interactions: 3 interactions with chain M, 1 interactions with chain K, 1 Ligand-Water interactions Metal complexes: M:H.85, M:E.89, M:H.157, K:H.182, H2O.100 MN.105: 5 residues within 4Å: Chain J: H.59, H.181, E.185 Chain N: H.86 Ligands: IMD.107 5 PLIP interactions: 3 interactions with chain J, 1 interactions with chain N, 1 Ligand-Water interactions Metal complexes: J:H.59, J:H.181, J:E.185, N:H.86, H2O.109 MN.106: 5 residues within 4Å: Chain J: H.182 Chain N: H.85, E.89, H.157 Ligands: IMD.107 5 PLIP interactions: 3 interactions with chain N, 1 interactions with chain J, 1 Ligand-Water interactions Metal complexes: N:H.85, N:E.89, N:H.157, J:H.182, H2O.109 MN.113: 5 residues within 4Å: Chain I: H.59, H.181, E.185 Chain O: H.86 Ligands: IMD.115 5 PLIP interactions: 3 interactions with chain I, 1 interactions with chain O, 1 Ligand-Water interactions Metal complexes: I:H.59, I:H.181, I:E.185, O:H.86, H2O.117 MN.114: 5 residues within 4Å: Chain I: H.182 Chain O: H.85, E.89, H.157 Ligands: IMD.115 5 PLIP interactions: 3 interactions with chain O, 1 interactions with chain I, 1 Ligand-Water interactions Metal complexes: O:H.85, O:E.89, O:H.157, I:H.182, H2O.117 MN.121: 5 residues within 4Å: Chain L: H.59, H.181, E.185 Chain P: H.86 Ligands: IMD.123 5 PLIP interactions: 3 interactions with chain L, 1 interactions with chain P, 1 Ligand-Water interactions Metal complexes: L:H.59, L:H.181, L:E.185, P:H.86, H2O.125 MN.122: 5 residues within 4Å: Chain L: H.182 Chain P: H.85, E.89, H.157 Ligands: IMD.123 5 PLIP interactions: 3 interactions with chain P, 1 interactions with chain L, 1 Ligand-Water interactions Metal complexes: P:H.85, P:E.89, P:H.157, L:H.182, H2O.125 MN.129: 5 residues within 4Å: Chain H: H.59, H.181, E.185 Chain Q: H.86 Ligands: IMD.131 5 PLIP interactions: 3 interactions with chain H, 1 interactions with chain Q, 1 Ligand-Water interactions Metal complexes: H:H.59, H:H.181, H:E.185, Q:H.86, H2O.134 MN.130: 5 residues within 4Å: Chain H: H.182 Chain Q: H.85, E.89, H.157 Ligands: IMD.131 5 PLIP interactions: 3 interactions with chain Q, 1 interactions with chain H, 1 Ligand-Water interactions Metal complexes: Q:H.85, Q:E.89, Q:H.157, H:H.182, H2O.133 MN.137: 5 residues within 4Å: Chain E: H.59, H.181, E.185 Chain R: H.86 Ligands: IMD.139 5 PLIP interactions: 1 interactions with chain R, 3 interactions with chain E, 1 Ligand-Water interactions Metal complexes: R:H.86, E:H.59, E:H.181, E:E.185, H2O.142 MN.138: 5 residues within 4Å: Chain E: H.182 Chain R: H.85, E.89, H.157 Ligands: IMD.139 5 PLIP interactions: 3 interactions with chain R, 1 interactions with chain E, 1 Ligand-Water interactions Metal complexes: R:H.85, R:E.89, R:H.157, E:H.182, H2O.142 MN.145: 5 residues within 4Å: Chain F: H.59, H.181, E.185 Chain S: H.86 Ligands: IMD.147 5 PLIP interactions: 3 interactions with chain F, 1 interactions with chain S, 1 Ligand-Water interactions Metal complexes: F:H.59, F:H.181, F:E.185, S:H.86, H2O.150 MN.146: 5 residues within 4Å: Chain F: H.182 Chain S: H.85, E.89, H.157 Ligands: IMD.147 5 PLIP interactions: 3 interactions with chain S, 1 interactions with chain F, 1 Ligand-Water interactions Metal complexes: S:H.85, S:E.89, S:H.157, F:H.182, H2O.150 MN.153: 5 residues within 4Å: Chain G: H.59, H.181, E.185 Chain T: H.86 Ligands: IMD.155 5 PLIP interactions: 3 interactions with chain G, 1 interactions with chain T, 1 Ligand-Water interactions Metal complexes: G:H.59, G:H.181, G:E.185, T:H.86, H2O.158 MN.154: 5 residues within 4Å: Chain G: H.182 Chain T: H.85, E.89, H.157 Ligands: IMD.155 5 PLIP interactions: 1 interactions with chain G, 3 interactions with chain T, 1 Ligand-Water interactions Metal complexes: G:H.182, T:H.85, T:E.89, T:H.157, H2O.158 MN.161: 5 residues within 4Å: Chain A: H.59, H.181, E.185 Chain U: H.86 Ligands: IMD.163 5 PLIP interactions: 3 interactions with chain A, 1 interactions with chain U, 1 Ligand-Water interactions Metal complexes: A:H.59, A:H.181, A:E.185, U:H.86, H2O.167 MN.162: 5 residues within 4Å: Chain A: H.182 Chain U: H.85, E.89, H.157 Ligands: IMD.163 5 PLIP interactions: 3 interactions with chain U, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: U:H.85, U:E.89, U:H.157, A:H.182, H2O.167 MN.169: 5 residues within 4Å: Chain D: H.59, H.181, E.185 Chain V: H.86 Ligands: IMD.171 5 PLIP interactions: 3 interactions with chain D, 1 interactions with chain V, 1 Ligand-Water interactions Metal complexes: D:H.59, D:H.181, D:E.185, V:H.86, H2O.175 MN.170: 5 residues within 4Å: Chain D: H.182 Chain V: H.85, E.89, H.157 Ligands: IMD.171 5 PLIP interactions: 1 interactions with chain D, 3 interactions with chain V, 1 Ligand-Water interactions Metal complexes: D:H.182, V:H.85, V:E.89, V:H.157, H2O.175 MN.177: 5 residues within 4Å: Chain C: H.59, H.181, E.185 Chain W: H.86 Ligands: IMD.179 5 PLIP interactions: 3 interactions with chain C, 1 interactions with chain W, 1 Ligand-Water interactions Metal complexes: C:H.59, C:H.181, C:E.185, W:H.86, H2O.183 MN.178: 5 residues within 4Å: Chain C: H.182 Chain W: H.85, E.89, H.157 Ligands: IMD.179 5 PLIP interactions: 1 interactions with chain C, 3 interactions with chain W, 1 Ligand-Water interactions Metal complexes: C:H.182, W:H.85, W:E.89, W:H.157, H2O.183 MN.185: 5 residues within 4Å: Chain B: H.59, H.181, E.185 Chain X: H.86 Ligands: IMD.187 5 PLIP interactions: 3 interactions with chain B, 1 interactions with chain X, 1 Ligand-Water interactions Metal complexes: B:H.59, B:H.181, B:E.185, X:H.86, H2O.192 MN.186: 5 residues within 4Å: Chain B: H.182 Chain X: H.85, E.89, H.157 Ligands: IMD.187 5 PLIP interactions: 1 interactions with chain B, 3 interactions with chain X, 1 Ligand-Water interactions Metal complexes: B:H.182, X:H.85, X:E.89, X:H.157, H2O.192

24 x IMD: IMIDAZOLE(Non-covalent)

IMD.3: 9 residues within 4Å: Chain A: H.85, E.89 Chain M: R.133 Chain W: L.119, H.181, H.182, E.185 Ligands: MN.1, MN.2 Ligand excluded by PLIP IMD.11: 9 residues within 4Å: Chain B: H.85, E.89 Chain N: R.133 Chain V: L.119, H.181, H.182, E.185 Ligands: MN.9, MN.10 Ligand excluded by PLIP IMD.19: 9 residues within 4Å: Chain C: H.85, E.89 Chain P: R.133 Chain U: L.119, H.181, H.182, E.185 Ligands: MN.17, MN.18 Ligand excluded by PLIP IMD.27: 9 residues within 4Å: Chain D: H.85, E.89 Chain O: R.133 Chain X: L.119, H.181, H.182, E.185 Ligands: MN.25, MN.26 Ligand excluded by PLIP IMD.35: 9 residues within 4Å: Chain E: H.85, E.89 Chain T: L.119, H.181, H.182, E.185 Chain W: R.133 Ligands: MN.33, MN.34 Ligand excluded by PLIP IMD.43: 9 residues within 4Å: Chain F: H.85, E.89 Chain Q: L.119, H.181, H.182, E.185 Chain X: R.133 Ligands: MN.41, MN.42 Ligand excluded by PLIP IMD.51: 9 residues within 4Å: Chain G: H.85, E.89 Chain R: L.119, H.181, H.182, E.185 Chain V: R.133 Ligands: MN.49, MN.50 Ligand excluded by PLIP IMD.59: 9 residues within 4Å: Chain H: H.85, E.89 Chain S: L.119, H.181, H.182, E.185 Chain U: R.133 Ligands: MN.57, MN.58 Ligand excluded by PLIP IMD.67: 9 residues within 4Å: Chain I: H.85, E.89 Chain M: L.119, H.181, H.182, E.185 Chain T: R.133 Ligands: MN.65, MN.66 Ligand excluded by PLIP IMD.75: 9 residues within 4Å: Chain J: H.85, E.89 Chain P: L.119, H.181, H.182, E.185 Chain S: R.133 Ligands: MN.73, MN.74 Ligand excluded by PLIP IMD.83: 9 residues within 4Å: Chain K: H.85, E.89 Chain O: L.119, H.181, H.182, E.185 Chain Q: R.133 Ligands: MN.81, MN.82 Ligand excluded by PLIP IMD.91: 9 residues within 4Å: Chain L: H.85, E.89 Chain N: L.119, H.181, H.182, E.185 Chain R: R.133 Ligands: MN.89, MN.90 Ligand excluded by PLIP IMD.99: 9 residues within 4Å: Chain A: R.133 Chain K: L.119, H.181, H.182, E.185 Chain M: H.85, E.89 Ligands: MN.97, MN.98 Ligand excluded by PLIP IMD.107: 9 residues within 4Å: Chain B: R.133 Chain J: L.119, H.181, H.182, E.185 Chain N: H.85, E.89 Ligands: MN.105, MN.106 Ligand excluded by PLIP IMD.115: 9 residues within 4Å: Chain D: R.133 Chain I: L.119, H.181, H.182, E.185 Chain O: H.85, E.89 Ligands: MN.113, MN.114 Ligand excluded by PLIP IMD.123: 9 residues within 4Å: Chain C: R.133 Chain L: L.119, H.181, H.182, E.185 Chain P: H.85, E.89 Ligands: MN.121, MN.122 Ligand excluded by PLIP IMD.131: 9 residues within 4Å: Chain H: L.119, H.181, H.182, E.185 Chain K: R.133 Chain Q: H.85, E.89 Ligands: MN.129, MN.130 Ligand excluded by PLIP IMD.139: 9 residues within 4Å: Chain E: L.119, H.181, H.182, E.185 Chain L: R.133 Chain R: H.85, E.89 Ligands: MN.137, MN.138 Ligand excluded by PLIP IMD.147: 9 residues within 4Å: Chain F: L.119, H.181, H.182, E.185 Chain J: R.133 Chain S: H.85, E.89 Ligands: MN.145, MN.146 Ligand excluded by PLIP IMD.155: 9 residues within 4Å: Chain G: L.119, H.181, H.182, E.185 Chain I: R.133 Chain T: H.85, E.89 Ligands: MN.153, MN.154 Ligand excluded by PLIP IMD.163: 9 residues within 4Å: Chain A: L.119, H.181, H.182, E.185 Chain H: R.133 Chain U: H.85, E.89 Ligands: MN.161, MN.162 Ligand excluded by PLIP IMD.171: 9 residues within 4Å: Chain D: L.119, H.181, H.182, E.185 Chain G: R.133 Chain V: H.85, E.89 Ligands: MN.169, MN.170 Ligand excluded by PLIP IMD.179: 9 residues within 4Å: Chain C: L.119, H.181, H.182, E.185 Chain E: R.133 Chain W: H.85, E.89 Ligands: MN.177, MN.178 Ligand excluded by PLIP IMD.187: 9 residues within 4Å: Chain B: L.119, H.181, H.182, E.185 Chain F: R.133 Chain X: H.85, E.89 Ligands: MN.185, MN.186 Ligand excluded by PLIP

48 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 8 residues within 4Å: Chain A: R.173, L.175 Chain H: R.173, L.175 Chain K: R.173, L.175 Ligands: SO4.60, SO4.84 Ligand excluded by PLIP SO4.5: 4 residues within 4Å: Chain M: R.111 Chain W: Q.63, H.67, K.189 Ligand excluded by PLIP SO4.12: 8 residues within 4Å: Chain B: R.173, L.175 Chain F: R.173, L.175 Chain J: R.173, L.175 Ligands: SO4.44, SO4.76 Ligand excluded by PLIP SO4.13: 4 residues within 4Å: Chain N: R.111 Chain V: Q.63, H.67, K.189 Ligand excluded by PLIP SO4.20: 8 residues within 4Å: Chain C: R.173, L.175 Chain E: R.173, L.175 Chain L: R.173, L.175 Ligands: SO4.36, SO4.92 Ligand excluded by PLIP SO4.21: 4 residues within 4Å: Chain P: R.111 Chain U: Q.63, H.67, K.189 Ligand excluded by PLIP SO4.28: 8 residues within 4Å: Chain D: R.173, L.175 Chain G: R.173, L.175 Chain I: R.173, L.175 Ligands: SO4.52, SO4.68 Ligand excluded by PLIP SO4.29: 4 residues within 4Å: Chain O: R.111 Chain X: Q.63, H.67, K.189 Ligand excluded by PLIP SO4.36: 8 residues within 4Å: Chain C: R.173, L.175 Chain E: R.173, L.175 Chain L: R.173, L.175 Ligands: SO4.20, SO4.92 Ligand excluded by PLIP SO4.37: 4 residues within 4Å: Chain T: Q.63, H.67, K.189 Chain W: R.111 Ligand excluded by PLIP SO4.44: 8 residues within 4Å: Chain B: R.173, L.175 Chain F: R.173, L.175 Chain J: R.173, L.175 Ligands: SO4.12, SO4.76 Ligand excluded by PLIP SO4.45: 4 residues within 4Å: Chain Q: Q.63, H.67, K.189 Chain X: R.111 Ligand excluded by PLIP SO4.52: 8 residues within 4Å: Chain D: R.173, L.175 Chain G: R.173, L.175 Chain I: R.173, L.175 Ligands: SO4.28, SO4.68 Ligand excluded by PLIP SO4.53: 4 residues within 4Å: Chain R: Q.63, H.67, K.189 Chain V: R.111 Ligand excluded by PLIP SO4.60: 8 residues within 4Å: Chain A: R.173, L.175 Chain H: R.173, L.175 Chain K: R.173, L.175 Ligands: SO4.4, SO4.84 Ligand excluded by PLIP SO4.61: 4 residues within 4Å: Chain S: Q.63, H.67, K.189 Chain U: R.111 Ligand excluded by PLIP SO4.68: 8 residues within 4Å: Chain D: R.173, L.175 Chain G: R.173, L.175 Chain I: R.173, L.175 Ligands: SO4.28, SO4.52 Ligand excluded by PLIP SO4.69: 4 residues within 4Å: Chain M: Q.63, H.67, K.189 Chain T: R.111 Ligand excluded by PLIP SO4.76: 8 residues within 4Å: Chain B: R.173, L.175 Chain F: R.173, L.175 Chain J: R.173, L.175 Ligands: SO4.12, SO4.44 Ligand excluded by PLIP SO4.77: 4 residues within 4Å: Chain P: Q.63, H.67, K.189 Chain S: R.111 Ligand excluded by PLIP SO4.84: 8 residues within 4Å: Chain A: R.173, L.175 Chain H: R.173, L.175 Chain K: R.173, L.175 Ligands: SO4.4, SO4.60 Ligand excluded by PLIP SO4.85: 4 residues within 4Å: Chain O: Q.63, H.67, K.189 Chain Q: R.111 Ligand excluded by PLIP SO4.92: 8 residues within 4Å: Chain C: R.173, L.175 Chain E: R.173, L.175 Chain L: R.173, L.175 Ligands: SO4.20, SO4.36 Ligand excluded by PLIP SO4.93: 4 residues within 4Å: Chain N: Q.63, H.67, K.189 Chain R: R.111 Ligand excluded by PLIP SO4.100: 8 residues within 4Å: Chain M: R.173, L.175 Chain T: R.173, L.175 Chain W: R.173, L.175 Ligands: SO4.156, SO4.180 Ligand excluded by PLIP SO4.101: 4 residues within 4Å: Chain A: R.111 Chain K: Q.63, H.67, K.189 Ligand excluded by PLIP SO4.108: 8 residues within 4Å: Chain N: R.173, L.175 Chain R: R.173, L.175 Chain V: R.173, L.175 Ligands: SO4.140, SO4.172 Ligand excluded by PLIP SO4.109: 4 residues within 4Å: Chain B: R.111 Chain J: Q.63, H.67, K.189 Ligand excluded by PLIP SO4.116: 8 residues within 4Å: Chain O: R.173, L.175 Chain Q: R.173, L.175 Chain X: R.173, L.175 Ligands: SO4.132, SO4.188 Ligand excluded by PLIP SO4.117: 4 residues within 4Å: Chain D: R.111 Chain I: Q.63, H.67, K.189 Ligand excluded by PLIP SO4.124: 8 residues within 4Å: Chain P: R.173, L.175 Chain S: R.173, L.175 Chain U: R.173, L.175 Ligands: SO4.148, SO4.164 Ligand excluded by PLIP SO4.125: 4 residues within 4Å: Chain C: R.111 Chain L: Q.63, H.67, K.189 Ligand excluded by PLIP SO4.132: 8 residues within 4Å: Chain O: R.173, L.175 Chain Q: R.173, L.175 Chain X: R.173, L.175 Ligands: SO4.116, SO4.188 Ligand excluded by PLIP SO4.133: 4 residues within 4Å: Chain H: Q.63, H.67, K.189 Chain K: R.111 Ligand excluded by PLIP SO4.140: 8 residues within 4Å: Chain N: R.173, L.175 Chain R: R.173, L.175 Chain V: R.173, L.175 Ligands: SO4.108, SO4.172 Ligand excluded by PLIP SO4.141: 4 residues within 4Å: Chain E: Q.63, H.67, K.189 Chain L: R.111 Ligand excluded by PLIP SO4.148: 8 residues within 4Å: Chain P: R.173, L.175 Chain S: R.173, L.175 Chain U: R.173, L.175 Ligands: SO4.124, SO4.164 Ligand excluded by PLIP SO4.149: 4 residues within 4Å: Chain F: Q.63, H.67, K.189 Chain J: R.111 Ligand excluded by PLIP SO4.156: 8 residues within 4Å: Chain M: R.173, L.175 Chain T: R.173, L.175 Chain W: R.173, L.175 Ligands: SO4.100, SO4.180 Ligand excluded by PLIP SO4.157: 4 residues within 4Å: Chain G: Q.63, H.67, K.189 Chain I: R.111 Ligand excluded by PLIP SO4.164: 8 residues within 4Å: Chain P: R.173, L.175 Chain S: R.173, L.175 Chain U: R.173, L.175 Ligands: SO4.124, SO4.148 Ligand excluded by PLIP SO4.165: 4 residues within 4Å: Chain A: Q.63, H.67, K.189 Chain H: R.111 Ligand excluded by PLIP SO4.172: 8 residues within 4Å: Chain N: R.173, L.175 Chain R: R.173, L.175 Chain V: R.173, L.175 Ligands: SO4.108, SO4.140 Ligand excluded by PLIP SO4.173: 4 residues within 4Å: Chain D: Q.63, H.67, K.189 Chain G: R.111 Ligand excluded by PLIP SO4.180: 8 residues within 4Å: Chain M: R.173, L.175 Chain T: R.173, L.175 Chain W: R.173, L.175 Ligands: SO4.100, SO4.156 Ligand excluded by PLIP SO4.181: 4 residues within 4Å: Chain C: Q.63, H.67, K.189 Chain E: R.111 Ligand excluded by PLIP SO4.188: 8 residues within 4Å: Chain O: R.173, L.175 Chain Q: R.173, L.175 Chain X: R.173, L.175 Ligands: SO4.116, SO4.132 Ligand excluded by PLIP SO4.189: 4 residues within 4Å: Chain B: Q.63, H.67, K.189 Chain F: R.111 Ligand excluded by PLIP

72 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 5 residues within 4Å: Chain A: N.35, V.36, S.37, R.75, A.76 Ligand excluded by PLIP EDO.7: 8 residues within 4Å: Chain A: L.100, L.103, R.106, L.130, S.131, G.132, S.166, G.167 Ligand excluded by PLIP EDO.8: 5 residues within 4Å: Chain A: L.103, E.105, R.106, K.107, I.109 Ligand excluded by PLIP EDO.14: 5 residues within 4Å: Chain B: N.35, V.36, S.37, R.75, A.76 Ligand excluded by PLIP EDO.15: 8 residues within 4Å: Chain B: L.100, L.103, R.106, L.130, S.131, G.132, S.166, G.167 Ligand excluded by PLIP EDO.16: 5 residues within 4Å: Chain B: L.103, E.105, R.106, K.107, I.109 Ligand excluded by PLIP EDO.22: 5 residues within 4Å: Chain C: N.35, V.36, S.37, R.75, A.76 Ligand excluded by PLIP EDO.23: 8 residues within 4Å: Chain C: L.100, L.103, R.106, L.130, S.131, G.132, S.166, G.167 Ligand excluded by PLIP EDO.24: 5 residues within 4Å: Chain C: L.103, E.105, R.106, K.107, I.109 Ligand excluded by PLIP EDO.30: 5 residues within 4Å: Chain D: N.35, V.36, S.37, R.75, A.76 Ligand excluded by PLIP EDO.31: 8 residues within 4Å: Chain D: L.100, L.103, R.106, L.130, S.131, G.132, S.166, G.167 Ligand excluded by PLIP EDO.32: 5 residues within 4Å: Chain D: L.103, E.105, R.106, K.107, I.109 Ligand excluded by PLIP EDO.38: 5 residues within 4Å: Chain E: N.35, V.36, S.37, R.75, A.76 Ligand excluded by PLIP EDO.39: 8 residues within 4Å: Chain E: L.100, L.103, R.106, L.130, S.131, G.132, S.166, G.167 Ligand excluded by PLIP EDO.40: 5 residues within 4Å: Chain E: L.103, E.105, R.106, K.107, I.109 Ligand excluded by PLIP EDO.46: 5 residues within 4Å: Chain F: N.35, V.36, S.37, R.75, A.76 Ligand excluded by PLIP EDO.47: 8 residues within 4Å: Chain F: L.100, L.103, R.106, L.130, S.131, G.132, S.166, G.167 Ligand excluded by PLIP EDO.48: 5 residues within 4Å: Chain F: L.103, E.105, R.106, K.107, I.109 Ligand excluded by PLIP EDO.54: 5 residues within 4Å: Chain G: N.35, V.36, S.37, R.75, A.76 Ligand excluded by PLIP EDO.55: 8 residues within 4Å: Chain G: L.100, L.103, R.106, L.130, S.131, G.132, S.166, G.167 Ligand excluded by PLIP EDO.56: 5 residues within 4Å: Chain G: L.103, E.105, R.106, K.107, I.109 Ligand excluded by PLIP EDO.62: 5 residues within 4Å: Chain H: N.35, V.36, S.37, R.75, A.76 Ligand excluded by PLIP EDO.63: 8 residues within 4Å: Chain H: L.100, L.103, R.106, L.130, S.131, G.132, S.166, G.167 Ligand excluded by PLIP EDO.64: 5 residues within 4Å: Chain H: L.103, E.105, R.106, K.107, I.109 Ligand excluded by PLIP EDO.70: 5 residues within 4Å: Chain I: N.35, V.36, S.37, R.75, A.76 Ligand excluded by PLIP EDO.71: 8 residues within 4Å: Chain I: L.100, L.103, R.106, L.130, S.131, G.132, S.166, G.167 Ligand excluded by PLIP EDO.72: 5 residues within 4Å: Chain I: L.103, E.105, R.106, K.107, I.109 Ligand excluded by PLIP EDO.78: 5 residues within 4Å: Chain J: N.35, V.36, S.37, R.75, A.76 Ligand excluded by PLIP EDO.79: 8 residues within 4Å: Chain J: L.100, L.103, R.106, L.130, S.131, G.132, S.166, G.167 Ligand excluded by PLIP EDO.80: 5 residues within 4Å: Chain J: L.103, E.105, R.106, K.107, I.109 Ligand excluded by PLIP EDO.86: 5 residues within 4Å: Chain K: N.35, V.36, S.37, R.75, A.76 Ligand excluded by PLIP EDO.87: 8 residues within 4Å: Chain K: L.100, L.103, R.106, L.130, S.131, G.132, S.166, G.167 Ligand excluded by PLIP EDO.88: 5 residues within 4Å: Chain K: L.103, E.105, R.106, K.107, I.109 Ligand excluded by PLIP EDO.94: 5 residues within 4Å: Chain L: N.35, V.36, S.37, R.75, A.76 Ligand excluded by PLIP EDO.95: 8 residues within 4Å: Chain L: L.100, L.103, R.106, L.130, S.131, G.132, S.166, G.167 Ligand excluded by PLIP EDO.96: 5 residues within 4Å: Chain L: L.103, E.105, R.106, K.107, I.109 Ligand excluded by PLIP EDO.102: 5 residues within 4Å: Chain M: N.35, V.36, S.37, R.75, A.76 Ligand excluded by PLIP EDO.103: 8 residues within 4Å: Chain M: L.100, L.103, R.106, L.130, S.131, G.132, S.166, G.167 Ligand excluded by PLIP EDO.104: 5 residues within 4Å: Chain M: L.103, E.105, R.106, K.107, I.109 Ligand excluded by PLIP EDO.110: 5 residues within 4Å: Chain N: N.35, V.36, S.37, R.75, A.76 Ligand excluded by PLIP EDO.111: 8 residues within 4Å: Chain N: L.100, L.103, R.106, L.130, S.131, G.132, S.166, G.167 Ligand excluded by PLIP EDO.112: 5 residues within 4Å: Chain N: L.103, E.105, R.106, K.107, I.109 Ligand excluded by PLIP EDO.118: 5 residues within 4Å: Chain O: N.35, V.36, S.37, R.75, A.76 Ligand excluded by PLIP EDO.119: 8 residues within 4Å: Chain O: L.100, L.103, R.106, L.130, S.131, G.132, S.166, G.167 Ligand excluded by PLIP EDO.120: 5 residues within 4Å: Chain O: L.103, E.105, R.106, K.107, I.109 Ligand excluded by PLIP EDO.126: 5 residues within 4Å: Chain P: N.35, V.36, S.37, R.75, A.76 Ligand excluded by PLIP EDO.127: 8 residues within 4Å: Chain P: L.100, L.103, R.106, L.130, S.131, G.132, S.166, G.167 Ligand excluded by PLIP EDO.128: 5 residues within 4Å: Chain P: L.103, E.105, R.106, K.107, I.109 Ligand excluded by PLIP EDO.134: 5 residues within 4Å: Chain Q: N.35, V.36, S.37, R.75, A.76 Ligand excluded by PLIP EDO.135: 8 residues within 4Å: Chain Q: L.100, L.103, R.106, L.130, S.131, G.132, S.166, G.167 Ligand excluded by PLIP EDO.136: 5 residues within 4Å: Chain Q: L.103, E.105, R.106, K.107, I.109 Ligand excluded by PLIP EDO.142: 5 residues within 4Å: Chain R: N.35, V.36, S.37, R.75, A.76 Ligand excluded by PLIP EDO.143: 8 residues within 4Å: Chain R: L.100, L.103, R.106, L.130, S.131, G.132, S.166, G.167 Ligand excluded by PLIP EDO.144: 5 residues within 4Å: Chain R: L.103, E.105, R.106, K.107, I.109 Ligand excluded by PLIP EDO.150: 5 residues within 4Å: Chain S: N.35, V.36, S.37, R.75, A.76 Ligand excluded by PLIP EDO.151: 8 residues within 4Å: Chain S: L.100, L.103, R.106, L.130, S.131, G.132, S.166, G.167 Ligand excluded by PLIP EDO.152: 5 residues within 4Å: Chain S: L.103, E.105, R.106, K.107, I.109 Ligand excluded by PLIP EDO.158: 5 residues within 4Å: Chain T: N.35, V.36, S.37, R.75, A.76 Ligand excluded by PLIP EDO.159: 8 residues within 4Å: Chain T: L.100, L.103, R.106, L.130, S.131, G.132, S.166, G.167 Ligand excluded by PLIP EDO.160: 5 residues within 4Å: Chain T: L.103, E.105, R.106, K.107, I.109 Ligand excluded by PLIP EDO.166: 5 residues within 4Å: Chain U: N.35, V.36, S.37, R.75, A.76 Ligand excluded by PLIP EDO.167: 8 residues within 4Å: Chain U: L.100, L.103, R.106, L.130, S.131, G.132, S.166, G.167 Ligand excluded by PLIP EDO.168: 5 residues within 4Å: Chain U: L.103, E.105, R.106, K.107, I.109 Ligand excluded by PLIP EDO.174: 5 residues within 4Å: Chain V: N.35, V.36, S.37, R.75, A.76 Ligand excluded by PLIP EDO.175: 8 residues within 4Å: Chain V: L.100, L.103, R.106, L.130, S.131, G.132, S.166, G.167 Ligand excluded by PLIP EDO.176: 5 residues within 4Å: Chain V: L.103, E.105, R.106, K.107, I.109 Ligand excluded by PLIP EDO.182: 5 residues within 4Å: Chain W: N.35, V.36, S.37, R.75, A.76 Ligand excluded by PLIP EDO.183: 8 residues within 4Å: Chain W: L.100, L.103, R.106, L.130, S.131, G.132, S.166, G.167 Ligand excluded by PLIP EDO.184: 5 residues within 4Å: Chain W: L.103, E.105, R.106, K.107, I.109 Ligand excluded by PLIP EDO.190: 5 residues within 4Å: Chain X: N.35, V.36, S.37, R.75, A.76 Ligand excluded by PLIP EDO.191: 8 residues within 4Å: Chain X: L.100, L.103, R.106, L.130, S.131, G.132, S.166, G.167 Ligand excluded by PLIP EDO.192: 5 residues within 4Å: Chain X: L.103, E.105, R.106, K.107, I.109 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bisson, C. et al., Crystal Structures Reveal that the Reaction Mechanism of Imidazoleglycerol-Phosphate Dehydratase Is Controlled by Switching Mn(II) Coordination. Structure (2015)

Release Date

2014-09-24

Peptides

Imidazoleglycerol-phosphate dehydratase 2, chloroplastic: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

M
A

N
A

O
A

P
A

Q
A

R
A

S
A

T
A

U
A

V
A

W
A

X
A

Imidazoleglycerol-phosphate dehydratase 2, chloroplastic