SMTL ID : 4n6n.1

Crystal structure of oxidized legumain in complex with cystatin E/M

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-functional Binders)

NAG-NAG-BMA.1: 5 residues within 4Å: Chain A: K.156, D.175, N.176, N.247, T.249 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 3 residues within 4Å: Chain A: N.142, H.146, H.172 No protein-ligand interaction detected (PLIP)

5 x IOD: IODIDE ION(Non-functional Binders)

IOD.3: 4 residues within 4Å: Chain A: H.4, Q.40, M.261, K.262 Ligand excluded by PLIP IOD.4: 2 residues within 4Å: Chain A: M.256, R.263 Ligand excluded by PLIP IOD.5: 2 residues within 4Å: Chain A: N.171, P.187 Ligand excluded by PLIP IOD.6: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.7: 3 residues within 4Å: Chain A: G.14, W.15, Y.16 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dall, E. et al., Structure and mechanism of an aspartimide-dependent Peptide ligase in human legumain. Angew.Chem.Int.Ed.Engl. (2015)

Release Date

2015-02-18

Peptides

Legumain: A
Cystatin-M: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Legumain

Cystatin-M

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