SMTL ID : 4n7b.1

Structure of the E-1-hydroxy-2-methyl-but-2-enyl-4-diphosphate reductase from Plasmodium falciparum

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x F3S: FE3-S4 CLUSTER(Non-covalent)

F3S.1: 15 residues within 4Å: Chain A: C.231, G.233, V.234, A.292, C.315, L.317, V.318, T.383, T.384, C.413, Y.414, A.415, T.416, A.484, W.520 3 PLIP interactions: 3 interactions with chain A, Metal complexes: A:C.231, A:C.315, A:C.413

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 8 residues within 4Å: Chain A: H.260, H.293, H.343, T.384, S.440, S.441, S.442, N.443 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:T.384, A:S.442, A:N.443, A:N.443 Water bridges: A:H.293, A:Q.382 Salt bridges: A:H.260, A:H.293, A:H.343 SO4.3: 2 residues within 4Å: Chain A: N.424, R.454 3 PLIP interactions: 3 interactions with chain A Water bridges: A:N.424, A:N.424 Salt bridges: A:R.454

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 3 residues within 4Å: Chain A: F.230, P.487, E.488 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.488 Water bridges: A:T.486, A:Q.489

2 x NA: SODIUM ION(Non-functional Binders)

NA.5: 4 residues within 4Å: Chain A: K.320, Y.324, I.407, S.409 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.324, A:Y.324, A:S.409 NA.6: 4 residues within 4Å: Chain A: A.353, P.354, H.355, C.356 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.353, A:H.355, A:C.356

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rekittke, I. et al., Structure of the (E)-4-hydroxy-3-methyl-but-2-enyl-diphosphate reductase from Plasmodium falciparum. Febs Lett. (2013)

Release Date

2013-11-20

Peptides

LytB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LytB