SMTL ID : 4nax.1

Crystal structure of glutathione transferase PPUT_1760 from Pseudomonas putida, target EFI-507288, with one glutathione disulfide bound per one protein subunit

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-dimer

Ligands

2 x GDS: OXIDIZED GLUTATHIONE DISULFIDE(Non-covalent)

GDS.1: 19 residues within 4Å: Chain A: T.28, P.29, N.30, K.33, F.52, Q.57, N.69, K.70, I.71, P.72, E.89, S.90, M.123, G.127, P.128, G.131, W.188 Chain B: R.152 Ligands: GOL.2 23 PLIP interactions: 18 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:N.30, A:Q.57, A:N.69, A:I.71, A:I.71, A:E.89, A:S.90 Water bridges: A:N.30, A:K.70, A:K.70, A:K.70, A:K.70, A:E.89, A:Q.122, A:Q.132, A:Y.196, B:R.152, B:R.152, B:E.156, B:E.156 Salt bridges: A:K.33, A:K.70, B:R.152 GDS.4: 19 residues within 4Å: Chain A: R.152 Chain B: T.28, P.29, N.30, K.33, F.52, Q.57, N.69, K.70, I.71, P.72, E.89, S.90, M.123, G.127, P.128, G.131, W.188 Ligands: GOL.5 23 PLIP interactions: 20 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:K.70 Hydrogen bonds: B:N.30, B:Q.57, B:N.69, B:I.71, B:I.71, B:E.89, B:S.90 Water bridges: B:N.30, B:K.70, B:K.70, B:K.70, B:K.70, B:E.89, B:Q.122, B:G.131, B:Q.132, B:Y.196, A:R.152, A:E.156 Salt bridges: B:K.33, B:K.70, A:R.152

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 10 residues within 4Å: Chain A: N.68, K.70, E.89 Chain B: F.121, G.124, G.125, E.156, R.159, L.160 Ligands: GDS.1 7 PLIP interactions: 2 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:G.124, B:R.159, A:N.68, A:K.70, A:E.89 Water bridges: A:K.70, A:K.70 GOL.5: 9 residues within 4Å: Chain A: F.121, G.124, G.125, E.156, R.159 Chain B: N.68, K.70, E.89 Ligands: GDS.4 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:R.159, B:N.68, B:K.70, B:E.89 Water bridges: A:G.124 GOL.6: 4 residues within 4Å: Chain A: R.159 Chain B: L.58, I.63, N.69 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.166, A:R.166

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 5 residues within 4Å: Chain A: F.136, H.137, K.142, K.147, R.150 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.137, A:R.150 Water bridges: A:H.137, A:K.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patskovsky, Y. et al., Crystal structure of glutathione transferase Pput_1760 from Pseudomonas putida, target EFI-507288. To be Published

Release Date

2013-11-06

Peptides

Glutathione S-transferase, N-terminal domain protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutathione S-transferase, N-terminal domain protein