SMTL ID : 4nbq.1

Structure of the polynucleotide phosphorylase (CBU_0852) from Coxiella burnetii

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.91 Å

Oligo State

homo-trimer

Ligands

13 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: R.421, H.425, S.456, G.458, S.459, S.460 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.456, A:S.456, A:G.458, A:S.460 Salt bridges: A:R.421 SO4.2: 2 residues within 4Å: Chain A: R.567, S.568 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.568 Salt bridges: A:R.567 SO4.3: 2 residues within 4Å: Chain A: T.537, E.539 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.537 SO4.4: 1 residues within 4Å: Chain A: R.52 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.52 SO4.5: 4 residues within 4Å: Chain A: F.121, P.122, K.123, N.164 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.123, A:N.164 Salt bridges: A:K.123 SO4.6: 5 residues within 4Å: Chain A: Y.276, Q.285, I.288, R.292, E.323 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.285, A:R.292 SO4.7: 3 residues within 4Å: Chain A: D.139, S.140 Chain C: R.358 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain A Salt bridges: C:R.358 Hydrogen bonds: A:S.140, A:S.140 SO4.8: 4 residues within 4Å: Chain A: R.358 Chain B: D.139, S.140, K.141 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.140, B:S.140, B:K.141 Salt bridges: B:K.141, A:R.358 SO4.9: 3 residues within 4Å: Chain B: R.567, S.568, Q.569 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.568, B:Q.569 Salt bridges: B:R.567 SO4.10: 7 residues within 4Å: Chain B: H.425, S.456, G.458, S.459, S.460, S.461, K.516 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.456, B:S.459, B:S.460, B:S.461 Salt bridges: B:H.425 SO4.11: 1 residues within 4Å: Chain B: R.52 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.52 SO4.12: 6 residues within 4Å: Chain C: F.404, H.425, S.456, G.458, S.459, S.460 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:S.456, C:S.460, C:S.460 Salt bridges: C:H.425 SO4.13: 2 residues within 4Å: Chain C: R.567, S.568 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.568 Salt bridges: C:R.567

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Franklin, M.C. et al., Structural genomics for drug design against the pathogen Coxiella burnetii. Proteins (2015)

Release Date

2015-06-17

Peptides

Polyribonucleotide nucleotidyltransferase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Polyribonucleotide nucleotidyltransferase