SMTL ID : 4nea.3 (2 other biounits)

1.90 Angstrom resolution crystal structure of betaine aldehyde dehydrogenase (betB) from Staphylococcus aureus in complex with NAD+ and BME-free Cys289

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 26 residues within 4Å: Chain A: I.177, T.178, P.179, W.180, N.181, K.204, S.206, E.207, G.237, S.238, G.241, D.242, F.255, T.256, G.257, G.258, T.261, H.264, I.265, E.279, L.280, C.313, H.360, K.363, E.414, F.416 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:P.179 Hydrogen bonds: A:T.178, A:N.181, A:K.204, A:E.207, A:G.237, A:D.242, A:G.257, A:G.258, A:T.261, A:T.261, A:E.279, A:C.313, A:E.414, A:E.414 Water bridges: A:Q.186, A:G.241, A:T.261, A:K.363 pi-Stacking: A:F.416 NAD.7: 25 residues within 4Å: Chain B: I.177, T.178, P.179, W.180, N.181, K.204, P.205, S.206, E.207, G.237, G.241, F.255, T.256, G.257, G.258, T.261, H.264, I.265, E.279, G.281, C.313, H.360, K.363, E.414, F.416 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:P.179 Hydrogen bonds: B:T.178, B:N.181, B:K.204, B:E.207, B:G.237, B:D.242, B:G.257, B:G.258, B:G.258, B:E.279, B:C.313, B:H.360, B:K.363, B:E.414, B:E.414 Water bridges: B:I.259, B:T.261, B:T.261 pi-Stacking: B:F.416

8 x K: POTASSIUM ION(Non-covalent)

K.2: 4 residues within 4Å: Chain A: K.484, G.487 Chain B: V.273, N.275 5 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: B:V.273, A:K.484, A:G.487, H2O.1, H2O.21 K.3: 4 residues within 4Å: Chain A: I.52, I.53, D.121, I.208 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:I.53, A:D.121, A:D.121, A:I.208, H2O.15 K.4: 4 residues within 4Å: Chain A: V.273, N.275 Chain B: K.484, G.487 5 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: B:K.484, B:G.487, A:V.273, H2O.1, H2O.20 K.5: 2 residues within 4Å: Chain A: E.498, L.501 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.498, A:L.501, H2O.6, H2O.12, H2O.12 K.6: 4 residues within 4Å: Chain A: K.248, V.250, N.272, T.274 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:V.250, A:T.274, H2O.1, H2O.8 K.8: 4 residues within 4Å: Chain B: K.248, V.250, N.272, T.274 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:K.248, B:V.250, B:T.274, H2O.20, H2O.22 K.9: 2 residues within 4Å: Chain B: E.498, L.501 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.498, B:L.501, H2O.20, H2O.30, H2O.36 K.10: 5 residues within 4Å: Chain B: I.52, I.53, D.121, I.208, T.209 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:I.53, B:D.121, B:D.121, B:I.208, H2O.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Halavaty, A.S. et al., Structural and functional analysis of betaine aldehyde dehydrogenase from Staphylococcus aureus. Acta Crystallogr.,Sect.D (2015)

Release Date

2013-11-06

Peptides

Betaine aldehyde dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Betaine aldehyde dehydrogenase

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