SMTL ID : 4nj4.1 (1 other biounit)

Crystal Structure of Human ALKBH5

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 3 residues within 4Å: Chain A: H.162, D.164, H.224 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.162, A:D.164, A:H.224, H2O.1, H2O.1, H2O.2

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.2: 5 residues within 4Å: Chain A: S.175, L.184, I.226, R.235, V.237 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.175, A:R.235, A:R.235

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: E.170, R.244, L.245, D.246 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.170, A:E.170, A:L.245, A:D.246, A:D.246 GOL.4: 6 residues within 4Å: Chain A: K.90, Y.97, I.159, V.160, H.162 Ligands: UN9.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.90 Water bridges: A:Y.97, A:Y.97

1 x UN9: N-[(1-CHLORO-4-HYDROXYISOQUINOLIN-3-YL)CARBONYL]GLYCINE(Covalent)

UN9.5: 6 residues within 4Å: Chain A: R.88, C.158, I.159, V.160, Q.191 Ligands: GOL.4 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Q.191, A:Q.191 Hydrogen bonds: A:C.158, A:V.160 Salt bridges: A:R.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aik, W. et al., Structure of human RNA N6-methyladenine demethylase ALKBH5 provides insights into its mechanisms of nucleic acid recognition and demethylation. Nucleic Acids Res. (2014)

Release Date

2014-01-15

Peptides

RNA demethylase ALKBH5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA demethylase ALKBH5

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