SMTL ID : 4nl2.1 (1 other biounit)

Crystal Structure of Listeria monocytogenes Hfq

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-hexamer

Ligands

10 x PGO: S-1,2-PROPANEDIOL(Non-covalent)

PGO.1: 4 residues within 4Å: Chain A: Q.6, Q.9, N.42 Chain B: F.43 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:F.43 Hydrogen bonds: A:Q.9, A:N.42, A:K.58 PGO.2: 3 residues within 4Å: Chain A: R.17, S.39, F.40 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.40 PGO.3: 5 residues within 4Å: Chain B: Q.6, Q.9, N.42, K.58 Chain C: F.43 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:Q.6, C:F.43 Hydrogen bonds: B:Q.9, B:N.42, B:K.58 PGO.4: 4 residues within 4Å: Chain B: N.14, R.17, S.39, F.40 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:F.40 PGO.5: 4 residues within 4Å: Chain C: N.14, R.17, S.39, F.40 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.39 PGO.6: 4 residues within 4Å: Chain D: Q.6, Q.9, N.42 Chain E: F.43 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain E Hydrogen bonds: D:Q.9, D:N.42, D:K.58 Hydrophobic interactions: E:F.43 PGO.7: 3 residues within 4Å: Chain D: R.17, S.39, F.40 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:F.40 PGO.8: 5 residues within 4Å: Chain E: Q.6, Q.9, N.42, K.58 Chain F: F.43 5 PLIP interactions: 4 interactions with chain E, 1 interactions with chain F Hydrophobic interactions: E:Q.6, F:F.43 Hydrogen bonds: E:Q.9, E:N.42, E:K.58 PGO.9: 4 residues within 4Å: Chain E: N.14, R.17, S.39, F.40 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:F.40 PGO.10: 4 residues within 4Å: Chain F: N.14, R.17, S.39, F.40 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:S.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kovach, A.R. et al., Recognition of U-rich RNA by Hfq from the Gram-positive pathogen Listeria monocytogenes. Rna (2014)

Release Date

2014-09-10

Peptides

Protein hfq: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
A

C
B

D
D

E
A

F
B

Protein hfq

Related Entries With Identical Sequence