SMTL ID : 4nm6.1

Crystal structure of TET2-DNA complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.68, C.146, C.148, H.255 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.68, A:C.146, A:C.148, A:H.255 ZN.2: 4 residues within 4Å: Chain A: C.8, C.10, H.94, C.96 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.8, A:C.10, A:H.94, A:C.96 ZN.3: 4 residues within 4Å: Chain A: C.164, C.173, C.233, H.439 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.164, A:C.173, A:C.233, A:H.439

1 x FE2: FE (II) ION(Non-covalent)

FE2.4: 4 residues within 4Å: Chain A: H.257, D.259, H.408 Ligands: OGA.5 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.257, A:D.259, A:H.408, H2O.2

1 x OGA: N-OXALYLGLYCINE(Non-covalent)

OGA.5: 13 residues within 4Å: Chain A: R.136, C.249, H.257, D.259, V.270, H.291, H.408, T.410, R.423, S.425, V.427 Chain B: C.6 Ligands: FE2.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.425 Salt bridges: A:R.136, A:H.257, A:H.291, A:R.423

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, L. et al., Crystal Structure of TET2-DNA Complex: Insight into TET-Mediated 5mC Oxidation. Cell(Cambridge,Mass.) (2013)

Release Date

2013-12-18

Peptides

Methylcytosine dioxygenase TET2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methylcytosine dioxygenase TET2

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