SMTL ID : 4npl.2 (1 other biounit)

Crystal structure of Zebrafish ALKBH5 in complex with alpha-ketoglutarate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: H.135, D.137, H.197 Ligands: AKG.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.135, A:D.137, A:H.197, H2O.2

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.2: 11 residues within 4Å: Chain A: N.124, Y.126, I.132, H.135, D.137, H.197, I.199, R.208, V.210, I.212 Ligands: MN.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.132, A:I.212 Hydrogen bonds: A:N.124 Water bridges: A:K.63, A:K.63, A:K.63, A:K.63, A:R.214 Salt bridges: A:K.63, A:H.135, A:R.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, W. et al., Crystal structure of the RNA demethylase ALKBH5 from zebrafish. Febs Lett. (2014)

Release Date

2014-02-19

Peptides

RNA demethylase ALKBH5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

RNA demethylase ALKBH5

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