SMTL ID : 4ntj.1

Structure of the human P2Y12 receptor in complex with an antithrombotic drug

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.62 Å

Oligo State

monomer

Ligands

1 x AZJ: ethyl 6-{4-[(benzylsulfonyl)carbamoyl]piperidin-1-yl}-5-cyano-2-methylpyridine-3-carboxylate(Non-covalent)

AZJ.1: 16 residues within 4Å: Chain A: V.111, Y.114, F.115, Y.118, L.164, S.165, N.168, V.199, N.200, C.203, Q.204, F.367, R.371, Y.374, L.391, K.395 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:V.111, A:Y.114, A:Y.114, A:L.164, A:V.199, A:F.367, A:F.367, A:R.371, A:Y.374, A:L.391, A:K.395, A:K.395 Hydrogen bonds: A:N.168, A:R.371, A:K.395 pi-Stacking: A:Y.114

2 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 5 residues within 4Å: Chain A: I.32, L.36, Y.393, S.397, W.400 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.36, A:Y.393 CLR.3: 8 residues within 4Å: Chain A: I.129, Y.132, Q.133, I.209, L.212, I.213, V.216 Ligands: OLC.5 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.129, A:Y.132, A:I.209, A:L.212, A:I.213, A:V.216 Hydrogen bonds: A:Q.133

2 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.4: 6 residues within 4Å: Chain A: F.361, V.365, P.366, A.370, Y.374, V.394 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.370, A:Y.374, A:Y.374 OLC.5: 6 residues within 4Å: Chain A: N.67, F.71, L.126, I.129, L.153 Ligands: CLR.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, K. et al., Structure of the human P2Y12 receptor in complex with an antithrombotic drug. Nature (2014)

Release Date

2014-03-26

Peptides

P2Y purinoceptor 12,Soluble cytochrome b562,P2Y purinoceptor 12: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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P2Y purinoceptor 12,Soluble cytochrome b562,P2Y purinoceptor 12

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