SMTL ID : 4o8a.1 (1 other biounit)

First structure of a proline utilization A proline dehydrogenase domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 32 residues within 4Å: Chain A: D.370, A.371, V.402, Q.404, Y.406, R.431, V.433, K.434, G.435, A.436, Y.437, W.438, Y.456, T.457, R.458, K.459, T.462, D.463, A.485, T.486, H.487, N.488, Q.511, C.512, L.513, Y.540, R.556, E.559, T.564, S.565, F.566 Ligands: 2OP.2 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:A.485, A:Q.511, A:L.513, A:L.513, A:Y.540 Hydrogen bonds: A:A.371, A:A.371, A:Q.404, A:R.431, A:K.434, A:G.435, A:G.435, A:G.435, A:A.436, A:T.457, A:D.463, A:T.486, A:H.487, A:N.488, A:N.488, A:E.559, A:T.564, A:F.566 Water bridges: A:K.459, A:E.559, A:E.559 Salt bridges: A:K.434, A:K.434, A:K.459 pi-Stacking: A:W.438, A:W.438

1 x 2OP: (2S)-2-HYDROXYPROPANOIC ACID(Non-covalent)

2OP.2: 9 residues within 4Å: Chain A: K.329, D.370, A.436, L.513, Y.540, Y.552, R.555, R.556 Ligands: FAD.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.513, A:Y.540, A:Y.552 Hydrogen bonds: A:K.329, A:K.329 Salt bridges: A:K.329, A:R.555, A:R.556

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 3 residues within 4Å: Chain A: L.474, L.498, A.499 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.507 PG4.4: 2 residues within 4Å: Chain A: M.255, N.560 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, Y.H. et al., Structure of the proline dehydrogenase domain of the multifunctional PutA flavoprotein. Nat.Struct.Biol. (2003)

Release Date

2014-01-15

Peptides

Bifunctional protein PutA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bifunctional protein PutA

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