SMTL ID : 4o8k.1

Crystal structure of Type III pantothenate kinase from Burkholderia thailandensis, apo structure

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: R.174, S.175, H.179 Chain B: R.174, S.175 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.174, A:S.175, A:H.179 EDO.2: 10 residues within 4Å: Chain A: Y.114, L.120, R.124, T.150, E.152, F.160, G.163, L.164, I.165 Chain B: A.214 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.152, A:G.163 EDO.5: 5 residues within 4Å: Chain A: P.206, F.207, I.209 Chain B: T.161 Ligands: EDO.6 1 PLIP interactions: 1 interactions with chain A Water bridges: A:F.207 EDO.6: 6 residues within 4Å: Chain A: F.207 Chain B: T.161, L.234, A.237, W.238 Ligands: EDO.5 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.161 Water bridges: A:F.207 EDO.7: 8 residues within 4Å: Chain A: A.214 Chain B: Y.114, L.120, R.124, T.150, E.152, G.163, I.165 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.124 EDO.8: 2 residues within 4Å: Chain B: G.109, H.132 1 PLIP interactions: 1 interactions with chain B Water bridges: B:C.108

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: W.38, A.52 Ligand excluded by PLIP

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 4 residues within 4Å: Chain A: Q.182 Chain B: N.33, G.146, T.147 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.147, A:Q.182 Water bridges: B:N.33, B:S.34, B:G.146, B:A.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seattle Structural Genomics Center for Infectious Disease et al., Crystal structure of Type III pantothenate kinase from Burkholderia thailandensis, apo structure. To be Published

Release Date

2014-01-15

Peptides

Type III pantothenate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Type III pantothenate kinase

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