- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- monomer
- Ligands
- 1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)
- 1 x 245: 1-(2-chloropyridin-4-yl)-3-phenylurea(Non-covalent)
245.2: 11 residues within 4Å:- Chain A: D.153, V.353, W.372, N.374, L.406, L.431, L.435, Y.470, L.471
- Ligands: FAD.1, EDO.10
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:V.353, A:V.353, A:W.372, A:L.431, A:L.435, A:L.435, A:Y.470, A:L.471
- Hydrogen bonds: A:D.153, A:D.153, A:D.153
- 10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 5 residues within 4Å:- Chain A: H.81, Y.154, H.354, E.357, R.361
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:H.81, A:Y.154, A:H.354, A:R.361
EDO.4: 6 residues within 4Å:- Chain A: H.116, G.122, H.123, L.226, E.227, R.228
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:H.123, A:H.123, A:L.226
EDO.5: 9 residues within 4Å:- Chain A: F.207, G.208, R.418, S.419, S.420, R.488, R.491, F.492, L.495
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.418, A:R.488
EDO.6: 9 residues within 4Å:- Chain A: F.173, H.174, I.254, S.255, L.256, S.258, N.411, H.413, K.414
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:H.174
EDO.7: 3 residues within 4Å:- Chain A: S.380, R.381, G.464
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.380, A:R.381, A:G.464
EDO.8: 4 residues within 4Å:- Chain A: A.493, K.496, A.497, P.501
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:A.497, A:P.501
EDO.9: 6 residues within 4Å:- Chain A: R.149, S.180, N.181, V.182, Y.183
- Ligands: EDO.11
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.149, A:V.182
- Water bridges: A:V.182
EDO.10: 7 residues within 4Å:- Chain A: L.360, H.370, W.372, L.435, R.436, S.437
- Ligands: 245.2
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:L.435, A:S.437
EDO.11: 5 residues within 4Å:- Chain A: H.175, S.180, N.181, K.414
- Ligands: EDO.9
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.181, A:K.414, A:K.414
EDO.12: 3 residues within 4Å:- Chain A: A.112, L.113, V.115
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:L.113
- Water bridges: A:D.126
- 1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kopecny, D. et al., Kinetic and structural investigation of the cytokinin oxidase/dehydrogenase active site. Febs J. (2016)
- Release Date
- 2015-04-01
- Peptides
- Cytokinin dehydrogenase 4: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- monomer
- Ligands
- 1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)
- 1 x 245: 1-(2-chloropyridin-4-yl)-3-phenylurea(Non-covalent)
- 10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kopecny, D. et al., Kinetic and structural investigation of the cytokinin oxidase/dehydrogenase active site. Febs J. (2016)
- Release Date
- 2015-04-01
- Peptides
- Cytokinin dehydrogenase 4: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A