SMTL ID : 4obk.1

Crystal structure of inactive HIV-1 protease in complex with the P1-P6 substrate variant (L449F/S451N)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

hetero-2-1-mer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: R.14, I.15, G.16, G.17, P.63, I.64, E.65 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.17 Water bridges: A:I.64, A:I.64 GOL.4: 5 residues within 4Å: Chain A: R.87 Chain B: W.6, K.7, R.8 Chain C: R.9 6 PLIP interactions: 2 interactions with chain B, 2 interactions with chain C, 2 interactions with chain A Hydrogen bonds: B:R.8, C:R.9, C:R.9, A:R.87, A:R.87 Water bridges: B:R.8 GOL.5: 5 residues within 4Å: Chain B: L.19, K.20, E.21, E.34, N.83 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.20, B:K.20, B:E.21, B:N.83 Water bridges: B:K.20

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: K.7, R.8 Chain B: R.87 Chain C: R.1 4 PLIP interactions: 1 interactions with chain A, 2 interactions with chain C, 1 interactions with chain B Hydrogen bonds: A:R.8, C:R.1, C:R.1, B:R.87

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 2 residues within 4Å: Chain A: H.69, K.70 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.70, A:K.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kolli, M. et al., HIV-1 protease-substrate coevolution in nelfinavir resistance. J.Virol. (2014)

Release Date

2014-11-26

Peptides

HIV-1 Protease: AB
p1-p6 peptide: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

HIV-1 Protease

p1-p6 peptide

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