SMTL ID : 4oda.2 (1 other biounit)

Crystal structure of the vaccinia virus DNA polymerase holoenzyme subunit D4 in complex with the A20 N-terminus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: T.99, K.100, K.101 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.101 Salt bridges: A:K.101 SO4.2: 6 residues within 4Å: Chain A: G.173, K.174, T.175, Y.194, H.195, A.198 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.174, A:T.175, A:H.195 Water bridges: A:D.176 SO4.3: 5 residues within 4Å: Chain A: Y.84, P.85, S.102, H.195 Ligands: GOL.4 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.195

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 10 residues within 4Å: Chain A: G.80, I.81, D.82, P.83, Y.84, P.92, F.93, S.102, N.134 Ligands: SO4.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.80, A:D.82, A:Y.84, A:F.93, A:S.102, A:N.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Contesto-Richefeu, C. et al., Crystal structure of the vaccinia virus DNA polymerase holoenzyme subunit d4 in complex with the a20 N-terminal domain. Plos Pathog. (2014)

Release Date

2014-03-26

Peptides

Uracil-DNA glycosylase: A
DNA polymerase processivity factor component A20: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Uracil-DNA glycosylase

DNA polymerase processivity factor component A20

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