SMTL ID : 4ogz.1 (2 other biounits)

Crystal structure of a putative alpha-galactosidase/melibiase (BF4189) from Bacteroides fragilis NCTC 9343 at 2.00 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.1: 8 residues within 4Å: Chain A: V.21, G.22, N.23, P.28, F.29, L.30, K.180 Ligands: PGE.3 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:L.30, A:K.180 Water bridges: A:L.97, A:T.99, A:T.99, A:P.100, A:Y.138, A:S.248 PGE.3: 6 residues within 4Å: Chain A: P.28, L.30, H.175, D.215, R.247 Ligands: PGE.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.247, A:R.247

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 5 residues within 4Å: Chain A: I.158, K.160, P.164, R.165 Ligands: PEG.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.160 Water bridges: A:K.160 PEG.4: 4 residues within 4Å: Chain A: K.168, D.172, W.212 Ligands: PEG.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.172 Water bridges: A:K.168, A:K.168, A:S.211 PEG.5: 3 residues within 4Å: Chain A: D.379, A.382, I.471 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a putative alpha-galactosidase/melibiase (BF4189) from Bacteroides fragilis NCTC 9343 at 2.00 A resolution. To be published

Release Date

2014-02-05

Peptides

Putative alpha-galactosidase/melibiase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative alpha-galactosidase/melibiase

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