SMTL ID : 4oho.1 (1 other biounit)

Human GKRP bound to AMG-2668

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.58 Å

Oligo State

monomer

Ligands

1 x 2TG: 5-{[(3S)-3-(prop-1-yn-1-yl)-4-{4-[S-(trifluoromethyl)sulfonimidoyl]phenyl}piperazin-1-yl]sulfonyl}pyridin-2-amine(Non-covalent)

2TG.1: 19 residues within 4Å: Chain A: V.40, P.41, E.44, S.46, G.193, S.195, N.221, M.225, A.226, R.227, D.229, H.516, K.526, W.529, R.530, A.533, M.534, R.537 Ligands: IOD.10 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.40, A:E.44, A:A.533, A:A.533 Hydrogen bonds: A:N.221, A:M.225, A:R.537 Water bridges: A:R.537 Salt bridges: A:E.44

1 x S6P: D-SORBITOL-6-PHOSPHATE(Non-covalent)

S6P.2: 15 residues within 4Å: Chain A: G.119, G.120, T.121, S.122, E.162, E.165, S.191, V.192, G.193, A.196, S.269, S.270, R.271, H.363, K.526 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:T.121, A:T.121, A:S.122, A:S.122, A:E.162, A:V.192, A:G.193, A:A.196, A:S.269, A:S.270, A:R.271, A:H.363, A:K.526 Water bridges: A:E.165, A:S.191, A:T.364 Salt bridges: A:K.526

12 x IOD: IODIDE ION(Non-functional Binders)

IOD.3: 3 residues within 4Å: Chain A: Y.480, F.484, I.485 Ligand excluded by PLIP IOD.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.5: 2 residues within 4Å: Chain A: R.85, G.262 Ligand excluded by PLIP IOD.6: 2 residues within 4Å: Chain A: A.58, L.508 Ligand excluded by PLIP IOD.7: 1 residues within 4Å: Chain A: T.310 Ligand excluded by PLIP IOD.8: 2 residues within 4Å: Chain A: R.161, G.163 Ligand excluded by PLIP IOD.9: 3 residues within 4Å: Chain A: G.15, K.17, A.566 Ligand excluded by PLIP IOD.10: 4 residues within 4Å: Chain A: E.37, K.45, S.46 Ligands: 2TG.1 Ligand excluded by PLIP IOD.11: 3 residues within 4Å: Chain A: T.16, F.19, K.543 Ligand excluded by PLIP IOD.12: 3 residues within 4Å: Chain A: C.205, N.208, W.234 Ligand excluded by PLIP IOD.13: 4 residues within 4Å: Chain A: Q.541, S.542, R.545, R.593 Ligand excluded by PLIP IOD.14: 2 residues within 4Å: Chain A: S.88, E.89 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nishimura, N. et al., Small molecule disruptors of the glucokinase-glucokinase regulatory protein interaction: 3. Structure-activity relationships within the aryl carbinol region of the N-arylsulfonamido-N'-arylpiperazine series. J.Med.Chem. (2014)

Release Date

2014-07-30

Peptides

Glucokinase regulatory protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucokinase regulatory protein

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