SMTL ID : 4ohw.1

C. Elegans Clp1 bound to ATP, and Mn2+(ATP-bound state)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 20 residues within 4Å: Chain A: E.19, R.21, F.42, R.59, V.60, A.61, T.126, D.127, V.128, G.129, K.130, T.131, T.132, Q.157, S.285, G.287, V.288, R.291, R.296 Ligands: MN.2 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:E.19, A:D.127, A:V.128, A:G.129, A:K.130, A:T.131, A:T.132, A:T.132, A:S.285, A:R.291 Water bridges: A:R.21, A:R.59, A:R.59, A:D.154, A:N.232, A:R.291, A:R.291 Salt bridges: A:R.291, A:R.291, A:R.296

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 2 residues within 4Å: Chain A: T.131 Ligands: ATP.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.131, H2O.1, H2O.1

1 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)

2PE.3: 6 residues within 4Å: Chain A: W.65, L.91, H.94, Y.140, R.143, Q.144 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.143, A:R.143

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dikfidan, A. et al., RNA specificity and regulation of catalysis in the eukaryotic polynucleotide kinase clp1. Mol.Cell (2014)

Release Date

2014-05-14

Peptides

Protein clpf-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein clpf-1

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