SMTL ID : 4okm.1 (3 other biounits)

Selinadiene Synthase apo and in complex with diphosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 7 residues within 4Å: Chain A: D.82, D.83, E.87, K.231, R.310 Ligands: MG.2, PPV.4 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.87, H2O.3, H2O.8, H2O.8 MG.2: 4 residues within 4Å: Chain A: D.82, E.87 Ligands: MG.1, PPV.4 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.82, A:E.87, H2O.5, H2O.8, H2O.8 MG.3: 5 residues within 4Å: Chain A: R.178, N.224, S.228, E.232 Ligands: PPV.4 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.228, A:E.232, H2O.8

1 x PPV: PYROPHOSPHATE(Non-covalent)

PPV.4: 14 residues within 4Å: Chain A: F.79, D.82, E.87, R.178, G.182, N.224, S.228, K.231, E.232, R.310, Y.311 Ligands: MG.1, MG.2, MG.3 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:N.224, A:S.228, A:E.232, A:Y.311 Water bridges: A:D.82, A:E.87, A:E.87, A:E.87, A:D.225, A:K.231 Salt bridges: A:R.178, A:K.231, A:R.310

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baer, P. et al., Induced-fit mechanism in class i terpene cyclases. Angew.Chem.Int.Ed.Engl. (2014)

Release Date

2014-06-11

Peptides

Terpene synthase metal-binding domain-containing protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Terpene synthase metal-binding domain-containing protein

Related Entries With Identical Sequence