Toggle navigation
Modelling
myWorkspace
Alignment Mode
User Template Mode
DeepView Project Mode
Modelling API
Template Library
Repository
SWISS-MODEL Repository
Repository API
3D-Beacons API
Annotation Projects
TBvar3D
Tools
Structure Assessment
Structure Comparison
QMEAN
Documentation
SWISS-MODEL
Examples
Video Tutorial
New Features
SWISS-MODEL Repository
QMEAN
Structure Assessment
Structure Comparison
TBvar3D
Protein Structure Course
References
Log in
Create Account
SMTL ID : 4opz.2
(1 other biounit)
Crystal structure of stabilized TEM-1 beta-lactamase variant v.13 carrying G238S mutation in complex with boron-based inhibitor EC25
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.45 Å
Oligo State
homo-dimer
Ligands
2 x
2UL
:
3-[(2R)-2-{[(2R)-2-amino-2-phenylacetyl]amino}-2-(dihydroxyboranyl)ethyl]benzoic acid
(Covalent)
2UL.1:
17 residues within 4Å:
Chain A:
M.44
,
S.45
,
K.48
,
E.79
,
Y.80
,
S.105
,
N.107
,
E.141
,
L.144
,
N.145
,
K.209
,
S.210
,
G.211
,
A.212
,
S.213
,
E.214
,
R.218
19
PLIP interactions
:
19 interactions with chain A
Hydrophobic interactions:
A:Y.80
,
A:Y.80
,
A:A.212
Hydrogen bonds:
A:S.45
,
A:S.105
,
A:S.105
,
A:N.107
,
A:N.145
,
A:N.145
,
A:A.212
,
A:A.212
,
A:A.212
Water bridges:
A:E.79
,
A:P.142
,
A:S.210
,
A:R.218
Salt bridges:
A:K.209
,
A:R.218
pi-Stacking:
A:Y.80
2UL.5:
17 residues within 4Å:
Chain B:
M.44
,
S.45
,
K.48
,
E.79
,
Y.80
,
S.105
,
N.107
,
E.141
,
L.144
,
N.145
,
K.209
,
S.210
,
G.211
,
A.212
,
S.213
,
E.214
,
R.218
20
PLIP interactions
:
20 interactions with chain B
Hydrophobic interactions:
B:Y.80
,
B:Y.80
,
B:A.212
Hydrogen bonds:
B:S.45
,
B:E.79
,
B:S.105
,
B:S.105
,
B:N.107
,
B:N.145
,
B:N.145
,
B:A.212
,
B:A.212
,
B:A.212
Water bridges:
B:E.79
,
B:P.142
,
B:S.210
,
B:R.218
Salt bridges:
B:K.209
,
B:R.218
pi-Stacking:
B:Y.80
2 x
CA
:
CALCIUM ION
(Non-covalent)
CA.2:
3 residues within 4Å:
Chain A:
E.12
Chain B:
E.12
Ligands:
CA.6
6
PLIP interactions
:
1 interactions with chain B
,
1 interactions with chain A
,
4 Ligand-Water interactions
Metal complexes:
B:E.12
,
A:E.12
,
H
2
O.1
,
H
2
O.1
,
H
2
O.15
,
H
2
O.15
CA.6:
3 residues within 4Å:
Chain A:
E.12
Chain B:
E.12
Ligands:
CA.2
6
PLIP interactions
:
1 interactions with chain B
,
1 interactions with chain A
,
4 Ligand-Water interactions
Metal complexes:
B:E.12
,
A:E.12
,
H
2
O.1
,
H
2
O.1
,
H
2
O.15
,
H
2
O.15
2 x
ACT
:
ACETATE ION
(Non-functional Binders)
ACT.3:
5 residues within 4Å:
Chain A:
K.86
,
H.87
,
L.88
,
T.89
,
D.90
7
PLIP interactions
:
7 interactions with chain A
Hydrogen bonds:
A:T.89
,
A:T.89
,
A:D.90
Water bridges:
A:K.86
,
A:H.87
,
A:L.88
Salt bridges:
A:H.87
ACT.7:
5 residues within 4Å:
Chain B:
K.86
,
H.87
,
L.88
,
T.89
,
D.90
6
PLIP interactions
:
6 interactions with chain B
Hydrogen bonds:
B:T.89
,
B:D.90
Water bridges:
B:K.86
,
B:H.87
,
B:L.88
Salt bridges:
B:H.87
2 x
EDO
:
1,2-ETHANEDIOL
(Non-functional Binders)
EDO.4:
4 residues within 4Å:
Chain A:
D.76
,
N.111
,
L.112
,
T.115
2
PLIP interactions
:
2 interactions with chain A
Hydrogen bonds:
A:D.76
,
A:T.115
EDO.8:
4 residues within 4Å:
Chain B:
D.76
,
N.111
,
L.112
,
T.115
4
PLIP interactions
:
4 interactions with chain B
Hydrogen bonds:
B:D.76
,
B:T.115
,
B:T.115
Water bridges:
B:D.76
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Dellus-Gur, E. et al., Negative Epistasis and Evolvability in TEM-1 beta-Lactamase--The Thin Line between an Enzyme's Conformational Freedom and Disorder. J. Mol. Biol. (2015)
Release Date
2015-05-20
Peptides
TEM-94 ES-beta-lactamase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
Multi FASTA
ClustalW
PNG
TEM-94 ES-beta-lactamase
Toggle Identical (AB)
Related Entries With Identical Sequence
4op8.1
|
4op8.2
|
4opr.1
|
4opr.2
|
4opz.1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme