SMTL ID : 4oq8.1 (4 other biounits)

Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using icosahedral constraints

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x U- U: RNA (5'-R(P*UP*U)-3')(Non-covalent)

U-U.1: 4 residues within 4Å: Chain A: R.125, R.131 Chain C: U.8, U.9 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.36, A:T.36 Water bridges: A:V.38

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 4 residues within 4Å: Chain A: N.115, N.117 Ligands: SO4.3, MG.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.115, A:N.117

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: N.117 Ligands: PO4.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.117 SO4.4: 2 residues within 4Å: Chain A: F.93, R.95 7 PLIP interactions: 7 interactions with chain A Water bridges: A:S.49, A:S.49, A:G.50, A:G.50, A:R.95, A:R.144 Salt bridges: A:R.95

1 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 2 residues within 4Å: Chain A: N.115 Ligands: PO4.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Larson, S.B. et al., Satellite tobacco mosaic virus refined to 1.4 angstrom resolution. Acta Crystallogr.,Sect.D (2014)

Release Date

2014-09-10

Peptides

Coat protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Coat protein

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