SMTL ID : 4p3a.6 (5 other biounits)

Crystal structure of the mouse C5a anaphylatoxin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-dimer

Ligands

6 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 6 residues within 4Å: Chain A: C.26, D.29, F.56 Chain B: V.46, I.48 Ligands: FMT.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.29 FMT.2: 3 residues within 4Å: Chain A: L.4, L.7, R.67 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.67 FMT.3: 5 residues within 4Å: Chain A: V.46, I.48 Chain B: D.29, F.56 Ligands: FMT.1 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.29 FMT.4: 5 residues within 4Å: Chain A: R.45 Chain B: N.34, R.42, R.45, F.56 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.34, B:R.42, B:R.45 Water bridges: B:R.42, A:R.45 FMT.5: 2 residues within 4Å: Chain B: F.35, Y.36 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.36, B:Y.36 FMT.6: 3 residues within 4Å: Chain B: A.2, L.7, R.67 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.67 Water bridges: B:V.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schatz-Jakobsen, J.A. et al., Structural and functional characterization of human and murine C5a anaphylatoxins. Acta Crystallogr. D Biol. Crystallogr. (2014)

Release Date

2014-06-11

Peptides

Complement C5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Complement C5

Related Entries With Identical Sequence