- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.51 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 2 x 2CR: (1R,2R)-2-[(2S,4E,6E,8R,9S,11R,13S,15S,16S)-7-cyano-8,16-dihydroxy-9,11,13,15-tetramethyl-18-oxooxacyclooctadeca-4,6-dien-2-yl]cyclopentanecarboxylic acid(Non-covalent)
2CR.2: 15 residues within 4Å:- Chain A: T.67, G.68, H.69, N.72, Y.73, M.92, C.94, R.123, Q.141, F.221, Y.222, T.242, D.246, L.249, H.271
13 PLIP interactions:13 interactions with chain A- Hydrophobic interactions: A:N.72, A:Y.73, A:Y.73, A:F.221, A:Y.222, A:Y.222, A:T.242
- Hydrogen bonds: A:Q.141, A:Y.222, A:D.246
- Water bridges: A:R.123, A:Q.141
- Salt bridges: A:R.123
2CR.7: 14 residues within 4Å:- Chain B: G.68, H.69, N.72, Y.73, M.92, C.94, R.123, Q.141, Y.222, T.242, Q.244, D.246, L.249, H.271
12 PLIP interactions:12 interactions with chain B- Hydrophobic interactions: B:N.72, B:Y.73, B:Y.222, B:T.242, B:Q.244, B:H.271
- Hydrogen bonds: B:Q.141, B:Y.222, B:D.246, B:L.249
- Water bridges: B:Q.141
- Salt bridges: B:R.123
- 5 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 7 residues within 4Å:- Chain A: Q.51, I.100, F.101, Q.103, K.106
- Chain B: D.12, H.27
9 PLIP interactions:3 interactions with chain A, 6 interactions with chain B- Hydrogen bonds: A:Q.51, A:I.100, A:K.106, B:D.12, B:H.27
- Water bridges: B:D.12, B:D.12, B:N.28, B:N.28
GOL.4: 8 residues within 4Å:- Chain A: D.12, H.27
- Chain B: Q.51, I.100, F.101, Q.103, K.106, L.113
6 PLIP interactions:3 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:D.12, B:Q.51, B:Q.103, B:K.106
- Water bridges: A:N.28, A:N.28
GOL.5: 7 residues within 4Å:- Chain A: V.24, W.26, T.140, E.279
- Chain B: K.54, G.55, P.56
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:V.24, A:W.26, A:T.140, B:G.55
GOL.8: 3 residues within 4Å:- Chain B: W.70, D.71, K.74
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.71, B:K.74
GOL.9: 7 residues within 4Å:- Chain A: K.54, G.55, P.56
- Chain B: V.24, W.26, T.140, E.279
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:V.24, B:E.279, A:G.55
- Water bridges: B:S.120, B:T.140
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
-
Fang, P. et al., Structural basis for full-spectrum inhibition of translational functions on a tRNA synthetase. Nat Commun (2015)
- Release Date
- 2015-03-11
- Peptides
- Threonine--tRNA ligase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.51 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 2 x 2CR: (1R,2R)-2-[(2S,4E,6E,8R,9S,11R,13S,15S,16S)-7-cyano-8,16-dihydroxy-9,11,13,15-tetramethyl-18-oxooxacyclooctadeca-4,6-dien-2-yl]cyclopentanecarboxylic acid(Non-covalent)
- 5 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
-
Fang, P. et al., Structural basis for full-spectrum inhibition of translational functions on a tRNA synthetase. Nat Commun (2015)
- Release Date
- 2015-03-11
- Peptides
- Threonine--tRNA ligase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B