SMTL ID : 4p5i.1

Crystal structure of the chemokine binding protein from orf virus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 11 residues within 4Å: Chain A: R.30, Y.96, G.98, L.99, G.100, Y.111, N.113, I.252, K.253, G.256, M.261 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.256 Water bridges: A:D.254, A:K.257 NAG-NAG.3: 11 residues within 4Å: Chain B: R.30, Y.96, G.98, L.99, G.100, Y.111, N.113, I.252, K.253, G.256, M.261 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.256 Water bridges: B:D.254, B:K.257

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: N.80, Q.147, G.149, D.151 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Q.147 Water bridges: A:N.80, A:N.80, A:N.80 NAG.4: 4 residues within 4Å: Chain B: N.80, Q.147, G.149, D.151 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:Q.147 Water bridges: B:E.75, B:N.80, B:N.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Counago, R.M. et al., Structures of Orf Virus Chemokine Binding Protein in Complex with Host Chemokines Reveal Clues to Broad Binding Specificity. Structure (2015)

Release Date

2015-07-15

Peptides

Chemokine binding protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Chemokine binding protein