SMTL ID : 4p83.1

Structure of engineered PyrR protein (PURPLE PyrR)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

4 x U5P: URIDINE-5'-MONOPHOSPHATE(Non-covalent)

U5P.1: 12 residues within 4Å: Chain A: K.41, D.106, D.107, V.108, F.110, T.111, G.112, R.113, T.114, R.139, L.162, I.163 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:F.110 Hydrogen bonds: A:K.41, A:D.106, A:D.107, A:F.110, A:F.110, A:T.111, A:G.112, A:R.113, A:T.114, A:T.114, A:R.139, A:I.163, A:I.163 Water bridges: A:T.111, A:T.111, A:V.115 U5P.2: 12 residues within 4Å: Chain B: K.41, D.106, D.107, V.108, F.110, T.111, G.112, R.113, T.114, R.139, L.162, I.163 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:F.110 Hydrogen bonds: B:K.41, B:D.106, B:D.107, B:F.110, B:T.111, B:G.112, B:R.113, B:T.114, B:T.114, B:T.114, B:R.139, B:I.163, B:I.163 Water bridges: B:T.111, B:T.111, B:T.111, B:T.111, B:V.115 U5P.3: 12 residues within 4Å: Chain C: K.41, D.106, D.107, V.108, F.110, T.111, G.112, R.113, T.114, R.139, L.162, I.163 15 PLIP interactions: 15 interactions with chain C Hydrophobic interactions: C:F.110 Hydrogen bonds: C:K.41, C:D.106, C:D.107, C:F.110, C:T.111, C:G.112, C:R.113, C:T.114, C:T.114, C:T.114, C:R.139, C:I.163, C:I.163 Water bridges: C:V.115 U5P.4: 15 residues within 4Å: Chain D: K.41, R.43, Y.73, R.74, D.106, D.107, V.108, F.110, T.111, G.112, R.113, T.114, R.139, L.162, I.163 18 PLIP interactions: 18 interactions with chain D Hydrophobic interactions: D:Y.73, D:F.110 Hydrogen bonds: D:K.41, D:R.43, D:D.106, D:D.107, D:F.110, D:T.111, D:G.112, D:R.113, D:T.114, D:T.114, D:R.139, D:I.163, D:I.163 Water bridges: D:R.74, D:T.111, D:V.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Perica, T. et al., Evolution of oligomeric state through allosteric pathways that mimic ligand binding. Science (2014)

Release Date

2014-12-17

Peptides

Engineered PyrR protein (Purple): ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Engineered PyrR protein (Purple)