SMTL ID : 4pbs.1

Crystal structure of the M. jannaschii F9 tRNA synthetase variant bound to 4-(2-bromoisobutyramido)-phenylalanine (BibaF)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

homo-dimer

Ligands

2 x 2L7: 4-[(2-bromo-2-methylpropanoyl)amino]-L-phenylalanine(Non-covalent)

2L7.1: 15 residues within 4Å: Chain A: G.32, I.33, G.34, E.36, E.65, A.67, H.70, I.137, Y.151, Q.155, G.158, C.159, L.162, V.164, Q.173 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:A.67, A:L.162, A:V.164 Hydrogen bonds: A:E.36, A:E.65, A:Y.151, A:Y.151, A:Q.155, A:Q.173 Water bridges: A:G.34 pi-Stacking: A:H.70 2L7.2: 15 residues within 4Å: Chain B: G.32, I.33, G.34, E.36, E.65, A.67, H.70, I.137, Y.151, Q.155, G.158, C.159, L.162, V.164, Q.173 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:A.67, B:L.162, B:V.164 Hydrogen bonds: B:E.36, B:E.36, B:E.65, B:Y.151, B:Y.151, B:Q.155, B:Q.173 Water bridges: B:G.34 pi-Stacking: B:H.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cooley, R.B. et al., Gleaning Unexpected Fruits from Hard-Won Synthetases: Probing Principles of Permissivity in Non-canonical Amino Acid-tRNA Synthetases. Chembiochem (2014)

Release Date

2014-07-23

Peptides

Tyrosine--tRNA ligase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Tyrosine--tRNA ligase