SMTL ID : 4pde.1

Crystal structure of FdhD in complex with GDP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 11 residues within 4Å: Chain A: S.240, F.260, K.262, R.265 Chain B: R.25, D.35, E.36, L.166, T.167, G.168 Ligands: GDP.2 8 PLIP interactions: 4 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:R.265, A:R.265, B:R.25, B:R.25, B:L.166 Salt bridges: A:K.262, B:D.35 pi-Stacking: A:F.260 GDP.2: 11 residues within 4Å: Chain A: R.25, D.35, E.36, L.166, T.167, G.168 Chain B: S.240, F.260, K.262, R.265 Ligands: GDP.1 8 PLIP interactions: 4 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:R.265, B:R.265, A:R.25, A:R.25, A:L.166 Salt bridges: B:K.262, A:D.35 pi-Stacking: B:F.260

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arnoux, P. et al., Sulphur shuttling across a chaperone during molybdenum cofactor maturation. Nat Commun (2015)

Release Date

2015-05-20

Peptides

Protein FdhD: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protein FdhD