SMTL ID : 4pi2.1

Crystal structure of particulate methane monooxygenase from Methylocystis sp. ATCC 49242 (Rockwell) soaked in zinc

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.33 Å

Oligo State

hetero-3-3-3-3-mer

Ligands

3 x CU: COPPER (II) ION(Non-covalent)

CU.1: 4 residues within 4Å: Chain D: H.29, E.31, H.133, H.135 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:H.29, D:H.133, D:H.135 CU.2: 4 residues within 4Å: Chain F: H.29, E.31, H.133, H.135 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:H.29, F:H.133, F:H.135 CU.3: 4 residues within 4Å: Chain G: H.29, E.31, H.133, H.135 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:H.29, G:H.133, G:H.135

5 x ZN: ZINC ION(Non-covalent)

ZN.4: 4 residues within 4Å: Chain H: D.129, H.133, H.146, E.201 5 PLIP interactions: 5 interactions with chain H Metal complexes: H:D.129, H:D.129, H:H.133, H:H.146, H:E.201 ZN.5: 2 residues within 4Å: Chain H: D.93, H.177 2 PLIP interactions: 2 interactions with chain H Metal complexes: H:D.93, H:H.177 ZN.6: 4 residues within 4Å: Chain K: D.129, H.133, H.146, E.201 5 PLIP interactions: 5 interactions with chain K Metal complexes: K:D.129, K:D.129, K:H.133, K:H.146, K:E.201 ZN.7: 4 residues within 4Å: Chain L: D.129, H.133, H.146, E.201 5 PLIP interactions: 5 interactions with chain L Metal complexes: L:D.129, L:D.129, L:H.133, L:H.146, L:E.201 ZN.8: 3 residues within 4Å: Chain L: D.93, H.177 Ligands: CAC.9 3 PLIP interactions: 3 interactions with chain L Metal complexes: L:D.93, L:D.93, L:H.177

1 x CAC: CACODYLATE ION(Non-covalent)

CAC.9: 4 residues within 4Å: Chain L: V.92, D.93, H.177 Ligands: ZN.8 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sirajuddin, S. et al., Effects of zinc on particulate methane monooxygenase activity and structure. J.Biol.Chem. (2014)

Release Date

2014-06-25

Peptides

unknown peptide: ABE
Particulate methane monooxygenase subunit A: CIJ
Particulate methane monooxygenase subunit B: DFG
Particulate methane monooxygenase subunit C: HKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
H

E
N

C
F

I
J

J
B

D
E

F
A

G
I

H
G

K
K

L
C

Membrane

We predict this structure to be a membrane protein.
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unknown peptide

Particulate methane monooxygenase subunit A

Particulate methane monooxygenase subunit B

Particulate methane monooxygenase subunit C

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