SMTL ID : 4pkf.1

Benzylsuccinate synthase alpha-beta-gamma complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-2-2-2-mer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: M.135, Q.170, P.175, L.178, G.179, Y.182 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.175 GOL.3: 4 residues within 4Å: Chain A: K.438, R.441, W.442, E.445 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.438 Water bridges: A:E.445, A:E.445 GOL.4: 5 residues within 4Å: Chain A: R.45, E.286, K.306, D.357, E.360 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.45, A:R.45, A:E.286, A:E.286, A:K.306, A:D.357 Water bridges: A:E.360 GOL.6: 6 residues within 4Å: Chain D: M.135, Q.170, P.175, L.178, G.179, Y.182 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:P.175 GOL.8: 4 residues within 4Å: Chain D: K.438, R.441, W.442, E.445 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:K.438 Water bridges: D:E.445 GOL.9: 5 residues within 4Å: Chain D: R.45, E.286, K.306, D.357, E.360 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:R.45, D:R.45, D:E.286, D:K.306, D:D.357 Water bridges: D:T.43

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 6 residues within 4Å: Chain A: L.491, C.492, M.493, S.494, W.612, Q.706 Ligand excluded by PLIP CL.7: 6 residues within 4Å: Chain D: L.491, C.492, M.493, S.494, W.612, Q.706 Ligand excluded by PLIP

2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.5: 10 residues within 4Å: Chain B: P.16, C.26, C.29, W.31, Q.32, C.44, A.46, C.67, R.69, H.70 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.26, B:C.29, B:C.44, B:C.67 SF4.10: 10 residues within 4Å: Chain E: P.16, C.26, C.29, W.31, Q.32, C.44, A.46, C.67, R.69, H.70 4 PLIP interactions: 4 interactions with chain E, Metal complexes: E:C.26, E:C.29, E:C.44, E:C.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Funk, M.A. et al., Structures of benzylsuccinate synthase elucidate roles of accessory subunits in glycyl radical enzyme activation and activity. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-07-02

Peptides

TutD: AD
TutG: BE
TutF: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

B
B

E
B

C
C

F
C

TutD

TutG

TutF

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