SMTL ID : 4psp.2 (1 other biounit)

Crystal Structure of GH29 family alpha-L-fucosidase from Fusarium graminearum in the open form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.56 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: P.386, N.387, N.401, S.402, S.403 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.387, A:N.387, A:N.401 Water bridges: A:N.401, A:S.403

3 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 8 residues within 4Å: Chain A: S.402, S.403, P.424, E.425, D.426, L.428, V.429, S.430 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.426, A:S.430, A:S.430 TRS.3: 10 residues within 4Å: Chain A: Y.271, K.272, H.273, H.274, D.275, H.276, F.278, R.279, N.280, D.285 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.275, A:F.278, A:N.280 TRS.4: 11 residues within 4Å: Chain A: R.297, A.378, W.379, D.380, R.409, D.413, I.495, G.516, V.517, A.532, G.533 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:W.379, A:D.380, A:R.409, A:R.409 Water bridges: A:R.297, A:W.379, A:D.413, A:D.413, A:I.495

2 x NA: SODIUM ION(Non-functional Binders)

NA.5: 4 residues within 4Å: Chain A: E.72, W.73, G.74, N.77 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.72, A:N.77 NA.6: 7 residues within 4Å: Chain A: D.15, K.16, H.17, N.18, A.19, T.281, S.282 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.17

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 11 residues within 4Å: Chain A: Y.32, H.34, E.46, W.47, H.126, H.171, W.224, D.226, K.272, D.303, W.311 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:H.34, A:H.126, A:D.226, A:K.272, A:D.303, A:D.303 Water bridges: A:H.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cao, H. et al., Structure and Substrate Specificity of a Eukaryotic Fucosidase from Fusarium graminearum. J.Biol.Chem. (2014)

Release Date

2014-03-19

Peptides

Alpha-fucosidase GH29: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Alpha-fucosidase GH29

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