SMTL ID : 4ptm.1

Crystal Structure of Chitinase D from Serratia proteamaculans in complex with N-acetyl glucosamine, a hydrolyzed product of hexasaccharide at 1.7 Angstrom resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 6 residues within 4Å: Chain A: Y.11, D.134, M.203, Y.205, W.378 Ligands: GOL.4 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.11, A:W.378 Hydrogen bonds: A:D.134 Water bridges: A:W.97

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.2: 4 residues within 4Å: Chain A: W.97, W.143, D.206, Y.209 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.206 Water bridges: A:N.180

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: Q.50, E.51, T.52, N.53, G.98, A.99, R.100 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Q.50, A:E.51, A:T.52, A:T.52, A:N.53, A:R.100 Water bridges: A:G.98, A:R.100 GOL.4: 8 residues within 4Å: Chain A: D.17, T.19, Y.205, D.206, Y.259, R.261, W.378 Ligands: ACT.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.17, A:D.206, A:D.206, A:R.261 Water bridges: A:D.206

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kushwaha, G.S. et al., Crystal Structure of Chitinase D from Serratia proteamaculans in complex with N-acetyl glucosamine, a hydrolyzed product of hexasaccharide at 1.7 Angstrom resolution. To be Published

Release Date

2014-04-02

Peptides

Glycoside hydrolase family 18: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycoside hydrolase family 18