SMTL ID : 4ptu.1

Crystal Structure of anti-23F strep Fab C05 with rhamnose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.51 Å

Oligo State

hetero-1-1-mer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 9 residues within 4Å: Chain A: Y.33, L.34, A.35, Y.50, D.51, Q.90 Chain B: S.108, F.110, A.111 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:A.35 Hydrogen bonds: A:L.34, A:D.51, A:D.51, B:S.108 ACT.2: 5 residues within 4Å: Chain A: H.39, P.41, V.86, Y.88 Chain B: Q.39 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:V.86 Hydrogen bonds: A:Y.88, B:Q.39 Salt bridges: A:H.39

1 x RAM: alpha-L-rhamnopyranose(Non-covalent)

RAM.3: 9 residues within 4Å: Chain A: R.92, D.93, S.94, W.95, P.97 Chain B: G.33, V.50, A.52, E.99 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:V.50, B:A.52 Hydrogen bonds: B:E.99, A:R.92, A:R.92, A:S.94 Water bridges: B:R.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bryson, S. et al., Structures of Preferred Human IgV Genes-Based Protective Antibodies Identify How Conserved Residues Contact Diverse Antigens and Assign Source of Specificity to CDR3 Loop Variation. J. Immunol. (2016)

Release Date

2015-03-04

Peptides

Antibody pn132p2C05, light chain: A
Antibody pn132p2C05, heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Antibody pn132p2C05, light chain

Antibody pn132p2C05, heavy chain

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